Copula-Based Joint Analysis of Multiple Phenotypes

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Documentation for package ‘CJAMP’ version 0.1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

cjamp	C-JAMP: Copula-based joint analysis of multiple phenotypes.
cjamp_loop	C-JAMP: Copula-based joint analysis of multiple phenotypes.
compute_expl_var	Phenotypic variance explained by genetic variants.
compute_MAF	Compute minor allele frequency of genetic variants.
generate_clayton_copula	Generate data from the Clayton copula.
generate_doubleton_data	Functions to generate genetic data.
generate_genodata	Functions to generate genetic data.
generate_phenodata	Functions to generate phenotype data.
generate_phenodata_1	Functions to generate phenotype data.
generate_phenodata_1_simple	Functions to generate phenotype data.
generate_phenodata_2_bvn	Functions to generate phenotype data.
generate_phenodata_2_copula	Functions to generate phenotype data.
generate_singleton_data	Functions to generate genetic data.
get_estimates_naive	Naive estimates of the copula and marginal parameters.
lrt	Compute likelihood ratio tests.
lrt_copula	Compute likelihood ratio tests.
lrt_param	Compute likelihood ratio tests.
minusloglik	Minus log-likelihood of copula models.
summary.cjamp	Summary function.