Detection and Analysis of Insect Defoliation Signals in Tree Rings

Documentation for package ‘dfoliatR’ version 0.3.0

as.defol	Alias to 'as_defol()'
as.obr	Alias to 'as_obr()'
as_defol	Cast data frame to list-like 'defol' object
as_obr	Cast data frame to list-like 'obr' object
defol	Constructor for S3 defol class
defoliate_trees	Identify defoliation events in host trees
defol_stats	Descriptive statistics for defoliation trees
dmj_defol	Demi John dfol object
dmj_h	Demi John Douglas-fir
dmj_nh	Demi John area ponderosa pine
dmj_obr	Demi John outbreak object
efk_defol	East Fork defol object
efk_h	East Fork Jemez River Douglas-fir
efk_nh	Baca ponderosa pine chronology
efk_obr	East Fork outbreak object
get_defol_events	Defoliation event list
gsi	Calculate the growth suppression index
id_defoliation	Identify defoliation events in a host series
is.defol	Check if object is tree-level defoliation object: 'defol'
is.obr	Check if object is outbreak, meaning site-level outbreak object
obr	Constructor for an 'obr' object.
outbreak	Composite defoliation series to determine outbreak events
outbreak_stats	Outbreak statistics
plot.defol	Plot a 'defol' object
plot_defol	Produce a Gantt plot of individual tree-ring series to show defoliation events in time
plot_outbreak	Produce a stacked plot to present composited, site-level insect outbreak chronologies
sample_depth	Calculate the sample depth of a defol object
series_names	Extract series names from a defol object
stack_defoliation	Stack a defoliation list