E-Value in the Omics Data Association Studies

---

Documentation for package ‘metevalue’ version 0.2.4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

demo_biseq_DMR	BiSeq Output Demo Dataset
demo_biseq_methyrate	BiSeq Methyrate Demo Dataset
demo_desq_out	DESeq Output Dataset
demo_DMRfinder_DMRs	DMRfinder Output Demo Dataset
demo_DMRfinder_rate_combine	DMRfinder Methyrate Demo Dataset
demo_methylkit_methyrate	Methyrate Dataset
demo_methylkit_met_all	Methyrate output dataset from methylKit
demo_metilene_input	Metilene Methyrate Demo Dataset
demo_metilene_out	Metilene Demo Output Dataset
evalue_buildin_sql	Build-in data process function
evalue_buildin_var_fmt_nm	Build-in check file format function Perform the format check and data clean for the "metilene" or "biseq", "DMRfinder" or "methylKit" method correspondingly.
metevalue.biseq	Calculate E-value of the BiSeq data format
metevalue.biseq.chk	Check the BiSeq data format
metevalue.DMRfinder	Calculate E-value of the DMRfinder data format
metevalue.DMRfinder.chk	Check the DMRfinder data format
metevalue.methylKit	Calculate E-value of the methylKit data format
metevalue.methylKit.chk	Check the methylKit data format
metevalue.metilene	Calculate E-value of the Metilene data format
metevalue.metilene.chk	Check the Metilene data format
metevalue.RNA_general	A general method to calculate the e-value for RNA-seq data.
varevalue.metilene	Calculate E-value of the Metilene data
varevalue.single_general	A general method to calculate the e-value for other DNA methylation tools not described above. The input data is the DNA methylation rates using the similar format with Metilene.