Testing examples for package 'base'
Testing examples for package 'tools'
  comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK
Testing examples for package 'utils'
Testing examples for package 'grDevices'
  comparing 'grDevices-Ex.Rout' to 'grDevices-Ex.Rout.save' ... OK
Testing examples for package 'graphics'
  comparing 'graphics-Ex.Rout' to 'graphics-Ex.Rout.save' ... OK
Testing examples for package 'stats'
  comparing 'stats-Ex.Rout' to 'stats-Ex.Rout.save' ... NOTE
  17463c17463
  < assertCondition: caught "error"
  ---
  > assertCondition: caught 'error'

Testing examples for package 'datasets'
  comparing 'datasets-Ex.Rout' to 'datasets-Ex.Rout.save' ... OK
Testing examples for package 'methods'
Testing examples for package 'grid'
  comparing 'grid-Ex.Rout' to 'grid-Ex.Rout.save' ... OK
Testing examples for package 'splines'
  comparing 'splines-Ex.Rout' to 'splines-Ex.Rout.save' ... OK
Testing examples for package 'stats4'
  comparing 'stats4-Ex.Rout' to 'stats4-Ex.Rout.save' ... OK
Testing examples for package 'tcltk'
Testing examples for package 'compiler'
Testing examples for package 'parallel'
running strict specific tests
running code in '../../../R-3.5-branch/tests/eval-etc.R' ... OK
  comparing 'eval-etc.Rout' to '../../../R-3.5-branch/tests/eval-etc.Rout.save' ... OK
running code in '../../../R-3.5-branch/tests/simple-true.R' ... OK
  comparing 'simple-true.Rout' to '../../../R-3.5-branch/tests/simple-true.Rout.save' ... OK
running code in '../../../R-3.5-branch/tests/arith-true.R' ... OK
  comparing 'arith-true.Rout' to '../../../R-3.5-branch/tests/arith-true.Rout.save' ... OK
running code in '../../../R-3.5-branch/tests/arith.R' ... OK
  comparing 'arith.Rout' to '../../../R-3.5-branch/tests/arith.Rout.save' ... OK
running code in '../../../R-3.5-branch/tests/lm-tests.R' ... OK
  comparing 'lm-tests.Rout' to '../../../R-3.5-branch/tests/lm-tests.Rout.save' ... OK
running code in '../../../R-3.5-branch/tests/ok-errors.R' ... OK
  comparing 'ok-errors.Rout' to '../../../R-3.5-branch/tests/ok-errors.Rout.save' ... OK
running code in '../../../R-3.5-branch/tests/method-dispatch.R' ... OK
  comparing 'method-dispatch.Rout' to '../../../R-3.5-branch/tests/method-dispatch.Rout.save' ... OK
running code in '../../../R-3.5-branch/tests/any-all.R' ... OK
  comparing 'any-all.Rout' to '../../../R-3.5-branch/tests/any-all.Rout.save' ... OK
running code in '../../../R-3.5-branch/tests/d-p-q-r-tests.R' ... OK
  comparing 'd-p-q-r-tests.Rout' to '../../../R-3.5-branch/tests/d-p-q-r-tests.Rout.save' ... OK
running sloppy specific tests
running code in '../../../R-3.5-branch/tests/complex.R' ... OK
  comparing 'complex.Rout' to '../../../R-3.5-branch/tests/complex.Rout.save' ... OK
running code in '../../../R-3.5-branch/tests/eval-etc-2.R' ... OK
  comparing 'eval-etc-2.Rout' to '../../../R-3.5-branch/tests/eval-etc-2.Rout.save' ... OK
running code in '../../../R-3.5-branch/tests/print-tests.R' ... OK
  comparing 'print-tests.Rout' to '../../../R-3.5-branch/tests/print-tests.Rout.save' ... OK
running code in '../../../R-3.5-branch/tests/lapack.R' ... OK
  comparing 'lapack.Rout' to '../../../R-3.5-branch/tests/lapack.Rout.save' ... OK
running code in '../../../R-3.5-branch/tests/datasets.R' ... OK
  comparing 'datasets.Rout' to '../../../R-3.5-branch/tests/datasets.Rout.save' ... OK
running code in '../../../R-3.5-branch/tests/datetime.R' ... OK
  comparing 'datetime.Rout' to '../../../R-3.5-branch/tests/datetime.Rout.save' ... OK
running code in '../../../R-3.5-branch/tests/iec60559.R' ... OK
  comparing 'iec60559.Rout' to '../../../R-3.5-branch/tests/iec60559.Rout.save' ... OK
checking Sys.timezone ...
running code in '../../../R-3.5-branch/tests/timezone.R' ... OK
running regression tests ...
running code in '../../../R-3.5-branch/tests/array-subset.R' ... OK
running code in '../../../R-3.5-branch/tests/reg-tests-1a.R' ... OK
running code in '../../../R-3.5-branch/tests/reg-tests-1b.R' ... OK
running code in '../../../R-3.5-branch/tests/reg-tests-1c.R' ... OK
running code in '../../../R-3.5-branch/tests/reg-tests-1d.R' ... OK
running code in '../../../R-3.5-branch/tests/reg-tests-2.R' ... OK
  comparing 'reg-tests-2.Rout' to '../../../R-3.5-branch/tests/reg-tests-2.Rout.save' ... OK
running code in '../../../R-3.5-branch/tests/reg-examples1.R' ... OK
running code in '../../../R-3.5-branch/tests/reg-examples2.R' ... OK
running code in '../../../R-3.5-branch/tests/reg-packages.R' ... OK
running code in '../../../R-3.5-branch/tests/p-qbeta-strict-tst.R' ... OK
running code in '../../../R-3.5-branch/tests/r-strict-tst.R' ... OK
running code in '../../../R-3.5-branch/tests/reg-IO.R' ... OK
  comparing 'reg-IO.Rout' to '../../../R-3.5-branch/tests/reg-IO.Rout.save' ... OK
running code in '../../../R-3.5-branch/tests/reg-IO2.R' ... OK
  comparing 'reg-IO2.Rout' to '../../../R-3.5-branch/tests/reg-IO2.Rout.save' ... OK
running code in '../../../R-3.5-branch/tests/reg-plot.R' ... OK
  comparing 'reg-plot.pdf' to '../../../R-3.5-branch/tests/reg-plot.pdf.save' ... OK
running code in '../../../R-3.5-branch/tests/reg-S4-examples.R' ... OK
running code in '../../../R-3.5-branch/tests/reg-BLAS.R' ... OK
running code in '../../../R-3.5-branch/tests/reg-tests-3.R' ... OK
  comparing 'reg-tests-3.Rout' to '../../../R-3.5-branch/tests/reg-tests-3.Rout.save' ... OK
running code in '../../../R-3.5-branch/tests/reg-examples3.R' ... OK
  comparing 'reg-examples3.Rout' to '../../../R-3.5-branch/tests/reg-examples3.Rout.save' ...340c340
< Achieved convergence tolerance: 9.33e-07
---
> Achieved convergence tolerance: 9.32e-07
 OK
running tests of plotting Latin-1
  expect failure or some differences if not in a Latin-1 or UTF-8 locale
running code in '../../../R-3.5-branch/tests/reg-plot-latin1.R' ... FAILED
running code in '../../../R-3.5-branch/tests/reg-S4.R' ... OK
  comparing 'reg-S4.Rout' to '../../../R-3.5-branch/tests/reg-S4.Rout.save' ... OK
running tests of Internet functions
running code in '../../../R-3.5-branch/tests/internet.R' ... OK
  comparing 'internet.Rout' to '../../../R-3.5-branch/tests/internet.Rout.save' ... OK

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checking for library containing connect... none required
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checking complex.h usability... yes
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checking wchar.h usability... yes
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checking for X... libraries /opt/X11/lib, headers /usr/X11/include
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using X11 ... yes
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checking for inline... inline
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checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
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checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fno-common
checking if gfortran PIC flag -fno-common works... yes
checking if gfortran static flag -static works... no
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checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin15.6.0 dyld
checking how to hardcode library paths into programs... immediate
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checking for gfortran option to support OpenMP... -fopenmp
checking for recommended packages... yes
checking whether NLS is requested... yes

Configuring src/extra/intl directory
checking for a thread-safe mkdir -p... ../../R-3.5-branch/tools/install-sh -c -d
checking whether we are using the GNU C Library 2 or newer... no
checking for ranlib... (cached) ranlib
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checking whether the inttypes.h PRIxNN macros are broken... no
checking for ld used by clang... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... no
checking for shared library run path origin... done
checking whether imported symbols can be declared weak... no
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checking for mempcpy... (cached) no
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checking for stpcpy... yes
checking for strcasecmp... yes
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checking for strtoul... yes
checking for tsearch... yes
checking for argz_count... no
checking for argz_stringify... no
checking for argz_next... no
checking for __fsetlocking... no
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... no
checking for iconv... (cached) yes
checking for iconv declaration... (cached) 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... no
checking for bison... bison
checking version of bison... 2.3, ok
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking whether we are using the GNU C Library 2.1 or newer... no
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... yes
checking for CFLocaleCopyCurrent... yes
checking for ptrdiff_t... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
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checking for string.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for putenv... (cached) yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for CFPreferencesCopyAppValue... (cached) yes
checking for CFLocaleCopyCurrent... (cached) yes
checking whether included gettext is requested... no
checking for GNU gettext in libc... no
checking for GNU gettext in libintl... no
checking whether to use NLS... yes
checking where the gettext function comes from... included intl directory
Finished configuring src/extra/intl directory

checking whether OpenMP SIMD reduction is supported... yes
using as R_SHELL for scripts ... /bin/sh
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating doc/html/Makefile
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config.status: creating src/main/Makefile
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config.status: creating src/scripts/R.sh
config.status: creating src/scripts/Rcmd
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config.status: creating src/unix/Makefile
config.status: creating tests/Makefile
config.status: creating tests/Embedding/Makefile
config.status: creating tests/Examples/Makefile
config.status: creating tools/Makefile
config.status: creating src/include/config.h
config.status: executing libtool commands
config.status: executing stamp-h commands

R is now configured for x86_64-apple-darwin15.6.0

  Source directory:          ../../R-3.5-branch
  Installation directory:    /Library/Frameworks

  C compiler:                clang  -Wall -g -O2
  Fortran 77 compiler:       gfortran  -g -O2

  Default C++ compiler:      clang++   -Wall -g -O2
  C++98 compiler:            clang++ -std=gnu++98 -Wall -g -O2
  C++11 compiler:            clang++ -std=gnu++11 -Wall -g -O2
  C++14 compiler:            clang++ -std=gnu++14 -Wall -g -O2
  C++17 compiler:            clang++ -std=gnu++17 -Wall -g -O2
  Fortran 90/95 compiler:    gfortran -Wall -g -O2
  Obj-C compiler:	     clang -Wall -g -O2 -fobjc-exceptions

  Interfaces supported:      X11, aqua, tcltk
  External libraries:        readline, curl
  Additional capabilities:   PNG, JPEG, TIFF, NLS, cairo, ICU
  Options enabled:           framework, shared BLAS, R profiling, memory profiling

  Capabilities skipped:      
  Options not enabled:       

  Recommended packages:      yes


[[system return code 0x0]]

creating RESOURCES
creating FAQ
creating doc/html/resources.html
make[1]: Nothing to be done for `R'.
make[1]: Nothing to be done for `R'.
make[2]: Nothing to be done for `R'.
mkdir ../share/R
mkdir ../share/dictionaries
mkdir ../share/encodings
mkdir ../share/java
mkdir ../share/licenses
mkdir ../share/make
mkdir ../share/Rd
mkdir ../share/Rd/macros
mkdir ../share/sh
mkdir ../share/texmf
mkdir ../share/texmf/bibtex
mkdir ../share/texmf/bibtex/bib
mkdir ../share/texmf/bibtex/bst
mkdir ../share/texmf/tex
mkdir ../share/texmf/tex/latex
creating src/scripts/R.fe
mkdir ../../bin
mkdir ../../include
mkdir ../../../include/R_ext
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../../R-3.5-branch/src/extra/blas/blas.f -o blas.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../../R-3.5-branch/src/extra/blas/cmplxblas.f -o cmplxblas.o
making localtime.d from ../../../../../R-3.5-branch/src/extra/tzone/localtime.c
making strftime.d from ../../../../../R-3.5-branch/src/extra/tzone/strftime.c
making regcomp.d from ../../../../../R-3.5-branch/src/extra/tre/regcomp.c
making regerror.d from ../../../../../R-3.5-branch/src/extra/tre/regerror.c
making regexec.d from ../../../../../R-3.5-branch/src/extra/tre/regexec.c
making bindtextdom.d from ../../../../../R-3.5-branch/src/extra/intl/bindtextdom.c
making tre-ast.d from ../../../../../R-3.5-branch/src/extra/tre/tre-ast.c
making dcgettext.d from ../../../../../R-3.5-branch/src/extra/intl/dcgettext.c
making tre-compile.d from ../../../../../R-3.5-branch/src/extra/tre/tre-compile.c
making tre-match-approx.d from ../../../../../R-3.5-branch/src/extra/tre/tre-match-approx.c
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/tzone -I../../../../../R-3.5-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H  -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/tzone/localtime.c -o localtime.o
making dgettext.d from ../../../../../R-3.5-branch/src/extra/intl/dgettext.c
making gettext.d from ../../../../../R-3.5-branch/src/extra/intl/gettext.c
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/tzone -I../../../../../R-3.5-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H  -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/tzone/strftime.c -o strftime.o
making tre-match-backtrack.d from ../../../../../R-3.5-branch/src/extra/tre/tre-match-backtrack.c
making finddomain.d from ../../../../../R-3.5-branch/src/extra/intl/finddomain.c
making loadmsgcat.d from ../../../../../R-3.5-branch/src/extra/intl/loadmsgcat.c
making textdomain.d from ../../../../../R-3.5-branch/src/extra/intl/textdomain.c
making tre-match-parallel.d from ../../../../../R-3.5-branch/src/extra/tre/tre-match-parallel.c
making tre-mem.d from ../../../../../R-3.5-branch/src/extra/tre/tre-mem.c
making l10nflist.d from ../../../../../R-3.5-branch/src/extra/intl/l10nflist.c
making explodename.d from ../../../../../R-3.5-branch/src/extra/intl/explodename.c
making tre-parse.d from ../../../../../R-3.5-branch/src/extra/tre/tre-parse.c
making tre-stack.d from ../../../../../R-3.5-branch/src/extra/tre/tre-stack.c
making dcigettext.d from ../../../../../R-3.5-branch/src/extra/intl/dcigettext.c
making dcngettext.d from ../../../../../R-3.5-branch/src/extra/intl/dcngettext.c
making dngettext.d from ../../../../../R-3.5-branch/src/extra/intl/dngettext.c
making xmalloc.d from ../../../../../R-3.5-branch/src/extra/tre/xmalloc.c
making ngettext.d from ../../../../../R-3.5-branch/src/extra/intl/ngettext.c
making plural.d from ../../../../../R-3.5-branch/src/extra/intl/plural.c
making plural-exp.d from ../../../../../R-3.5-branch/src/extra/intl/plural-exp.c
making langprefs.d from ../../../../../R-3.5-branch/src/extra/intl/langprefs.c
clang -I../../../../../R-3.5-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/tre/regcomp.c -o regcomp.o
clang -I../../../../../R-3.5-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/tre/regerror.c -o regerror.o
making localcharset.d from ../../../../../R-3.5-branch/src/extra/intl/localcharset.c
making localename.d from ../../../../../R-3.5-branch/src/extra/intl/localename.c
making printf.d from ../../../../../R-3.5-branch/src/extra/intl/printf.c
making osdep.d from ../../../../../R-3.5-branch/src/extra/intl/osdep.c
making intl-compat.d from ../../../../../R-3.5-branch/src/extra/intl/intl-compat.c
clang -I../../../../../R-3.5-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/tre/regexec.c -o regexec.o
making hash-string.d from ../../../../../R-3.5-branch/src/extra/intl/hash-string.c
making lock.d from ../../../../../R-3.5-branch/src/extra/intl/lock.c
clang -I../../../../../R-3.5-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/tre/tre-ast.c -o tre-ast.o
clang -I../../../../../R-3.5-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/tre/tre-compile.c -o tre-compile.o
clang -I../../../../../R-3.5-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/tre/tre-match-approx.c -o tre-match-approx.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/bindtextdom.c -o bindtextdom.o
clang -I../../../../../R-3.5-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/tre/tre-match-backtrack.c -o tre-match-backtrack.o
clang -I../../../../../R-3.5-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/tre/tre-match-parallel.c -o tre-match-parallel.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/dcgettext.c -o dcgettext.o
ar -cr libtz.a localtime.o strftime.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/dgettext.c -o dgettext.o
clang -I../../../../../R-3.5-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/tre/tre-mem.c -o tre-mem.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/gettext.c -o gettext.o
clang -I../../../../../R-3.5-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/tre/tre-parse.c -o tre-parse.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/finddomain.c -o finddomain.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/loadmsgcat.c -o loadmsgcat.o
clang -I../../../../../R-3.5-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/tre/tre-stack.c -o tre-stack.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/textdomain.c -o textdomain.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/l10nflist.c -o l10nflist.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/explodename.c -o explodename.o
clang -I../../../../../R-3.5-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/tre/xmalloc.c -o xmalloc.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/dcigettext.c -o dcigettext.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/dcngettext.c -o dcngettext.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/dngettext.c -o dngettext.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/ngettext.c -o ngettext.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/plural.c -o plural.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/plural-exp.c -o plural-exp.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/langprefs.c -o langprefs.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/localcharset.c -o localcharset.o
ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/localename.c -o localename.o
ranlib libtre.a
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/printf.c -o printf.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/osdep.c -o osdep.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/intl-compat.c -o intl-compat.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/hash-string.c -o hash-string.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I../../../../../R-3.5-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.5-branch/src/extra/intl/lock.c -o lock.o
ar -cr libintl.a bindtextdom.o dcgettext.o dgettext.o gettext.o finddomain.o loadmsgcat.o textdomain.o l10nflist.o explodename.o dcigettext.o dcngettext.o dngettext.o ngettext.o plural.o plural-exp.o langprefs.o localcharset.o localename.o printf.o osdep.o intl-compat.o hash-string.o lock.o

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(printf.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(osdep.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(lock.o) has no symbols
ranlib libintl.a

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(printf.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(osdep.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(lock.o) has no symbols
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -fopenmp -L/usr/local/lib -o libRblas.dylib blas.o  cmplxblas.o -install_name libRblas.dylib -headerpad_max_install_names -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm
mkdir /Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib
making integrate.d from ../../../../R-3.5-branch/src/appl/integrate.c
making interv.d from ../../../../R-3.5-branch/src/appl/interv.c
making maxcol.d from ../../../../R-3.5-branch/src/appl/maxcol.c
making optim.d from ../../../../R-3.5-branch/src/appl/optim.c
making uncmin.d from ../../../../R-3.5-branch/src/appl/uncmin.c
making pretty.d from ../../../../R-3.5-branch/src/appl/pretty.c
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/appl/integrate.c -o integrate.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/appl/interv.c -o interv.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/appl/maxcol.c -o maxcol.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/appl/optim.c -o optim.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/appl/pretty.c -o pretty.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/appl/uncmin.c -o uncmin.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.5-branch/src/appl/dchdc.f -o dchdc.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.5-branch/src/appl/dpbfa.f -o dpbfa.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.5-branch/src/appl/dpbsl.f -o dpbsl.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.5-branch/src/appl/dpoco.f -o dpoco.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.5-branch/src/appl/dpodi.f -o dpodi.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.5-branch/src/appl/dpofa.f -o dpofa.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.5-branch/src/appl/dposl.f -o dposl.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.5-branch/src/appl/dqrdc.f -o dqrdc.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.5-branch/src/appl/dqrdc2.f -o dqrdc2.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.5-branch/src/appl/dqrls.f -o dqrls.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.5-branch/src/appl/dqrsl.f -o dqrsl.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.5-branch/src/appl/dqrutl.f -o dqrutl.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.5-branch/src/appl/dsvdc.f -o dsvdc.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.5-branch/src/appl/dtrco.f -o dtrco.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.5-branch/src/appl/dtrsl.f -o dtrsl.o
ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o 
ranlib libappl.a
making mlutils.d from ../../../../R-3.5-branch/src/nmath/mlutils.c
making fmax2.d from ../../../../R-3.5-branch/src/nmath/fmax2.c
making d1mach.d from ../../../../R-3.5-branch/src/nmath/d1mach.c
making i1mach.d from ../../../../R-3.5-branch/src/nmath/i1mach.c
making fprec.d from ../../../../R-3.5-branch/src/nmath/fprec.c
making fmin2.d from ../../../../R-3.5-branch/src/nmath/fmin2.c
making fround.d from ../../../../R-3.5-branch/src/nmath/fround.c
making ftrunc.d from ../../../../R-3.5-branch/src/nmath/ftrunc.c
making sign.d from ../../../../R-3.5-branch/src/nmath/sign.c
making imax2.d from ../../../../R-3.5-branch/src/nmath/imax2.c
making fsign.d from ../../../../R-3.5-branch/src/nmath/fsign.c
making imin2.d from ../../../../R-3.5-branch/src/nmath/imin2.c
making lgammacor.d from ../../../../R-3.5-branch/src/nmath/lgammacor.c
making chebyshev.d from ../../../../R-3.5-branch/src/nmath/chebyshev.c
making log1p.d from ../../../../R-3.5-branch/src/nmath/log1p.c
making gammalims.d from ../../../../R-3.5-branch/src/nmath/gammalims.c
making stirlerr.d from ../../../../R-3.5-branch/src/nmath/stirlerr.c
making bd0.d from ../../../../R-3.5-branch/src/nmath/bd0.c
making gamma.d from ../../../../R-3.5-branch/src/nmath/gamma.c
making lgamma.d from ../../../../R-3.5-branch/src/nmath/lgamma.c
making gamma_cody.d from ../../../../R-3.5-branch/src/nmath/gamma_cody.c
making beta.d from ../../../../R-3.5-branch/src/nmath/beta.c
making lbeta.d from ../../../../R-3.5-branch/src/nmath/lbeta.c
making polygamma.d from ../../../../R-3.5-branch/src/nmath/polygamma.c
making cospi.d from ../../../../R-3.5-branch/src/nmath/cospi.c
making bessel_i.d from ../../../../R-3.5-branch/src/nmath/bessel_i.c
making bessel_j.d from ../../../../R-3.5-branch/src/nmath/bessel_j.c
making choose.d from ../../../../R-3.5-branch/src/nmath/choose.c
making bessel_k.d from ../../../../R-3.5-branch/src/nmath/bessel_k.c
making bessel_y.d from ../../../../R-3.5-branch/src/nmath/bessel_y.c
making snorm.d from ../../../../R-3.5-branch/src/nmath/snorm.c
making sexp.d from ../../../../R-3.5-branch/src/nmath/sexp.c
making dgamma.d from ../../../../R-3.5-branch/src/nmath/dgamma.c
making pgamma.d from ../../../../R-3.5-branch/src/nmath/pgamma.c
making qgamma.d from ../../../../R-3.5-branch/src/nmath/qgamma.c
making dbeta.d from ../../../../R-3.5-branch/src/nmath/dbeta.c
making rgamma.d from ../../../../R-3.5-branch/src/nmath/rgamma.c
making pbeta.d from ../../../../R-3.5-branch/src/nmath/pbeta.c
making qbeta.d from ../../../../R-3.5-branch/src/nmath/qbeta.c
making rbeta.d from ../../../../R-3.5-branch/src/nmath/rbeta.c
making punif.d from ../../../../R-3.5-branch/src/nmath/punif.c
making dunif.d from ../../../../R-3.5-branch/src/nmath/dunif.c
making qunif.d from ../../../../R-3.5-branch/src/nmath/qunif.c
making pnorm.d from ../../../../R-3.5-branch/src/nmath/pnorm.c
making runif.d from ../../../../R-3.5-branch/src/nmath/runif.c
making dnorm.d from ../../../../R-3.5-branch/src/nmath/dnorm.c
making qnorm.d from ../../../../R-3.5-branch/src/nmath/qnorm.c
making rnorm.d from ../../../../R-3.5-branch/src/nmath/rnorm.c
making dlnorm.d from ../../../../R-3.5-branch/src/nmath/dlnorm.c
making plnorm.d from ../../../../R-3.5-branch/src/nmath/plnorm.c
making qlnorm.d from ../../../../R-3.5-branch/src/nmath/qlnorm.c
making rlnorm.d from ../../../../R-3.5-branch/src/nmath/rlnorm.c
making df.d from ../../../../R-3.5-branch/src/nmath/df.c
making pf.d from ../../../../R-3.5-branch/src/nmath/pf.c
making qf.d from ../../../../R-3.5-branch/src/nmath/qf.c
making rf.d from ../../../../R-3.5-branch/src/nmath/rf.c
making dnf.d from ../../../../R-3.5-branch/src/nmath/dnf.c
making dt.d from ../../../../R-3.5-branch/src/nmath/dt.c
making pt.d from ../../../../R-3.5-branch/src/nmath/pt.c
making qt.d from ../../../../R-3.5-branch/src/nmath/qt.c
making rt.d from ../../../../R-3.5-branch/src/nmath/rt.c
making dnt.d from ../../../../R-3.5-branch/src/nmath/dnt.c
making dchisq.d from ../../../../R-3.5-branch/src/nmath/dchisq.c
making pchisq.d from ../../../../R-3.5-branch/src/nmath/pchisq.c
making qchisq.d from ../../../../R-3.5-branch/src/nmath/qchisq.c
making rchisq.d from ../../../../R-3.5-branch/src/nmath/rchisq.c
making rnchisq.d from ../../../../R-3.5-branch/src/nmath/rnchisq.c
making dbinom.d from ../../../../R-3.5-branch/src/nmath/dbinom.c
making pbinom.d from ../../../../R-3.5-branch/src/nmath/pbinom.c
making qbinom.d from ../../../../R-3.5-branch/src/nmath/qbinom.c
making rbinom.d from ../../../../R-3.5-branch/src/nmath/rbinom.c
making rmultinom.d from ../../../../R-3.5-branch/src/nmath/rmultinom.c
making dcauchy.d from ../../../../R-3.5-branch/src/nmath/dcauchy.c
making qcauchy.d from ../../../../R-3.5-branch/src/nmath/qcauchy.c
making pcauchy.d from ../../../../R-3.5-branch/src/nmath/pcauchy.c
making rcauchy.d from ../../../../R-3.5-branch/src/nmath/rcauchy.c
making dexp.d from ../../../../R-3.5-branch/src/nmath/dexp.c
making pexp.d from ../../../../R-3.5-branch/src/nmath/pexp.c
making qexp.d from ../../../../R-3.5-branch/src/nmath/qexp.c
making rexp.d from ../../../../R-3.5-branch/src/nmath/rexp.c
making dgeom.d from ../../../../R-3.5-branch/src/nmath/dgeom.c
making pgeom.d from ../../../../R-3.5-branch/src/nmath/pgeom.c
making rgeom.d from ../../../../R-3.5-branch/src/nmath/rgeom.c
making qgeom.d from ../../../../R-3.5-branch/src/nmath/qgeom.c
making phyper.d from ../../../../R-3.5-branch/src/nmath/phyper.c
making qhyper.d from ../../../../R-3.5-branch/src/nmath/qhyper.c
making dhyper.d from ../../../../R-3.5-branch/src/nmath/dhyper.c
making rhyper.d from ../../../../R-3.5-branch/src/nmath/rhyper.c
making dnbinom.d from ../../../../R-3.5-branch/src/nmath/dnbinom.c
making rnbinom.d from ../../../../R-3.5-branch/src/nmath/rnbinom.c
making qnbinom.d from ../../../../R-3.5-branch/src/nmath/qnbinom.c
making pnbinom.d from ../../../../R-3.5-branch/src/nmath/pnbinom.c
making dpois.d from ../../../../R-3.5-branch/src/nmath/dpois.c
making ppois.d from ../../../../R-3.5-branch/src/nmath/ppois.c
making qpois.d from ../../../../R-3.5-branch/src/nmath/qpois.c
making rpois.d from ../../../../R-3.5-branch/src/nmath/rpois.c
making dweibull.d from ../../../../R-3.5-branch/src/nmath/dweibull.c
making pweibull.d from ../../../../R-3.5-branch/src/nmath/pweibull.c
making qweibull.d from ../../../../R-3.5-branch/src/nmath/qweibull.c
making rweibull.d from ../../../../R-3.5-branch/src/nmath/rweibull.c
making dlogis.d from ../../../../R-3.5-branch/src/nmath/dlogis.c
making plogis.d from ../../../../R-3.5-branch/src/nmath/plogis.c
making qlogis.d from ../../../../R-3.5-branch/src/nmath/qlogis.c
making rlogis.d from ../../../../R-3.5-branch/src/nmath/rlogis.c
making dnchisq.d from ../../../../R-3.5-branch/src/nmath/dnchisq.c
making pnchisq.d from ../../../../R-3.5-branch/src/nmath/pnchisq.c
making qnchisq.d from ../../../../R-3.5-branch/src/nmath/qnchisq.c
making dnbeta.d from ../../../../R-3.5-branch/src/nmath/dnbeta.c
making pnbeta.d from ../../../../R-3.5-branch/src/nmath/pnbeta.c
making qnbeta.d from ../../../../R-3.5-branch/src/nmath/qnbeta.c
making pnt.d from ../../../../R-3.5-branch/src/nmath/pnt.c
making pnf.d from ../../../../R-3.5-branch/src/nmath/pnf.c
making qnf.d from ../../../../R-3.5-branch/src/nmath/qnf.c
making qnt.d from ../../../../R-3.5-branch/src/nmath/qnt.c
making ptukey.d from ../../../../R-3.5-branch/src/nmath/ptukey.c
making qtukey.d from ../../../../R-3.5-branch/src/nmath/qtukey.c
making toms708.d from ../../../../R-3.5-branch/src/nmath/toms708.c
making wilcox.d from ../../../../R-3.5-branch/src/nmath/wilcox.c
making signrank.d from ../../../../R-3.5-branch/src/nmath/signrank.c
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/mlutils.c -o mlutils.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/d1mach.c -o d1mach.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/i1mach.c -o i1mach.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/fmax2.c -o fmax2.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/fmin2.c -o fmin2.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/fprec.c -o fprec.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/fround.c -o fround.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/ftrunc.c -o ftrunc.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/sign.c -o sign.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/fsign.c -o fsign.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/imax2.c -o imax2.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/imin2.c -o imin2.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/chebyshev.c -o chebyshev.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/log1p.c -o log1p.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/lgammacor.c -o lgammacor.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/gammalims.c -o gammalims.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/stirlerr.c -o stirlerr.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/bd0.c -o bd0.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/gamma.c -o gamma.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/lgamma.c -o lgamma.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/gamma_cody.c -o gamma_cody.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/beta.c -o beta.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/lbeta.c -o lbeta.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/polygamma.c -o polygamma.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/cospi.c -o cospi.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/bessel_i.c -o bessel_i.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/bessel_j.c -o bessel_j.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/bessel_k.c -o bessel_k.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/bessel_y.c -o bessel_y.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/choose.c -o choose.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/snorm.c -o snorm.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/sexp.c -o sexp.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/dgamma.c -o dgamma.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/pgamma.c -o pgamma.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/qgamma.c -o qgamma.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/rgamma.c -o rgamma.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/dbeta.c -o dbeta.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/pbeta.c -o pbeta.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/qbeta.c -o qbeta.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/rbeta.c -o rbeta.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/dunif.c -o dunif.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/punif.c -o punif.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/qunif.c -o qunif.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/runif.c -o runif.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/dnorm.c -o dnorm.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/pnorm.c -o pnorm.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/qnorm.c -o qnorm.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/rnorm.c -o rnorm.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/dlnorm.c -o dlnorm.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/plnorm.c -o plnorm.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/qlnorm.c -o qlnorm.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/rlnorm.c -o rlnorm.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/df.c -o df.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/pf.c -o pf.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/qf.c -o qf.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/rf.c -o rf.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/dnf.c -o dnf.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/dt.c -o dt.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/pt.c -o pt.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/qt.c -o qt.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/rt.c -o rt.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/dnt.c -o dnt.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/dchisq.c -o dchisq.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/pchisq.c -o pchisq.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/qchisq.c -o qchisq.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/rchisq.c -o rchisq.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/rnchisq.c -o rnchisq.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/dbinom.c -o dbinom.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/pbinom.c -o pbinom.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/qbinom.c -o qbinom.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/rbinom.c -o rbinom.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/rmultinom.c -o rmultinom.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/dcauchy.c -o dcauchy.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/pcauchy.c -o pcauchy.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/qcauchy.c -o qcauchy.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/rcauchy.c -o rcauchy.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/dexp.c -o dexp.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/pexp.c -o pexp.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/qexp.c -o qexp.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/rexp.c -o rexp.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/dgeom.c -o dgeom.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/pgeom.c -o pgeom.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/qgeom.c -o qgeom.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/rgeom.c -o rgeom.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/dhyper.c -o dhyper.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/phyper.c -o phyper.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/qhyper.c -o qhyper.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/rhyper.c -o rhyper.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/dnbinom.c -o dnbinom.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/pnbinom.c -o pnbinom.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/qnbinom.c -o qnbinom.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/rnbinom.c -o rnbinom.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/dpois.c -o dpois.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/ppois.c -o ppois.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/qpois.c -o qpois.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/rpois.c -o rpois.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/dweibull.c -o dweibull.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/pweibull.c -o pweibull.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/qweibull.c -o qweibull.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/rweibull.c -o rweibull.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/dlogis.c -o dlogis.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/plogis.c -o plogis.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/qlogis.c -o qlogis.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/rlogis.c -o rlogis.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/dnchisq.c -o dnchisq.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/pnchisq.c -o pnchisq.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/qnchisq.c -o qnchisq.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/dnbeta.c -o dnbeta.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/pnbeta.c -o pnbeta.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/qnbeta.c -o qnbeta.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/pnf.c -o pnf.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/pnt.c -o pnt.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/qnf.c -o qnf.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/qnt.c -o qnt.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/ptukey.c -o ptukey.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/qtukey.c -o qtukey.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/toms708.c -o toms708.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/wilcox.c -o wilcox.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/nmath/signrank.c -o signrank.o
ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(mlutils.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(log1p.o) has no symbols
ranlib libnmath.a

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(mlutils.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(log1p.o) has no symbols
config.status: creating src/unix/Makefile
making Rembedded.d from ../../../../R-3.5-branch/src/unix/Rembedded.c
making system.d from ../../../../R-3.5-branch/src/unix/system.c
making dynload.d from ../../../../R-3.5-branch/src/unix/dynload.c
making sys-unix.d from ../../../../R-3.5-branch/src/unix/sys-unix.c
making X11.d from ../../../../R-3.5-branch/src/unix/X11.c
making sys-std.d from ../../../../R-3.5-branch/src/unix/sys-std.c
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -I/usr/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/unix/Rembedded.c -o Rembedded.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -I/usr/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/unix/dynload.c -o dynload.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -I/usr/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/unix/system.c -o system.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -I/usr/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/unix/sys-unix.c -o sys-unix.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -I/usr/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/unix/sys-std.c -o sys-std.o
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -I/usr/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/unix/X11.c -o X11.o
ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
ranlib libunix.a
clang -I. -I../../src/include -I../../../../R-3.5-branch/src/include -I/usr/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H    -Wall -g -O2  -L/usr/local/lib -DR_HOME='"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch"' \
	  -o Rscript ../../../../R-3.5-branch/src/unix/Rscript.c
config.status: creating src/main/Makefile
making CommandLineArgs.d from ../../../../R-3.5-branch/src/main/CommandLineArgs.c
making Rdynload.d from ../../../../R-3.5-branch/src/main/Rdynload.c
making Renviron.d from ../../../../R-3.5-branch/src/main/Renviron.c
making RNG.d from ../../../../R-3.5-branch/src/main/RNG.c
making agrep.d from ../../../../R-3.5-branch/src/main/agrep.c
making altrep.d from ../../../../R-3.5-branch/src/main/altrep.c
making apply.d from ../../../../R-3.5-branch/src/main/apply.c
making arithmetic.d from ../../../../R-3.5-branch/src/main/arithmetic.c
making attrib.d from ../../../../R-3.5-branch/src/main/attrib.c
making array.d from ../../../../R-3.5-branch/src/main/array.c
making bind.d from ../../../../R-3.5-branch/src/main/bind.c
making builtin.d from ../../../../R-3.5-branch/src/main/builtin.c
making character.d from ../../../../R-3.5-branch/src/main/character.c
making coerce.d from ../../../../R-3.5-branch/src/main/coerce.c
making colors.d from ../../../../R-3.5-branch/src/main/colors.c
making complex.d from ../../../../R-3.5-branch/src/main/complex.c
making connections.d from ../../../../R-3.5-branch/src/main/connections.c
making context.d from ../../../../R-3.5-branch/src/main/context.c
making cum.d from ../../../../R-3.5-branch/src/main/cum.c
making dcf.d from ../../../../R-3.5-branch/src/main/dcf.c
making datetime.d from ../../../../R-3.5-branch/src/main/datetime.c
making debug.d from ../../../../R-3.5-branch/src/main/debug.c
making deparse.d from ../../../../R-3.5-branch/src/main/deparse.c
making devices.d from ../../../../R-3.5-branch/src/main/devices.c
making dotcode.d from ../../../../R-3.5-branch/src/main/dotcode.c
making dounzip.d from ../../../../R-3.5-branch/src/main/dounzip.c
making dstruct.d from ../../../../R-3.5-branch/src/main/dstruct.c
making duplicate.d from ../../../../R-3.5-branch/src/main/duplicate.c
making edit.d from ../../../../R-3.5-branch/src/main/edit.c
making engine.d from ../../../../R-3.5-branch/src/main/engine.c
making envir.d from ../../../../R-3.5-branch/src/main/envir.c
making errors.d from ../../../../R-3.5-branch/src/main/errors.c
making eval.d from ../../../../R-3.5-branch/src/main/eval.c
making format.d from ../../../../R-3.5-branch/src/main/format.c
making gevents.d from ../../../../R-3.5-branch/src/main/gevents.c
making gram.d from ../../../../R-3.5-branch/src/main/gram.c
making gram-ex.d from ../../../../R-3.5-branch/src/main/gram-ex.c
making graphics.d from ../../../../R-3.5-branch/src/main/graphics.c
making grep.d from ../../../../R-3.5-branch/src/main/grep.c
making identical.d from ../../../../R-3.5-branch/src/main/identical.c
making inlined.d from ../../../../R-3.5-branch/src/main/inlined.c
making inspect.d from ../../../../R-3.5-branch/src/main/inspect.c
making internet.d from ../../../../R-3.5-branch/src/main/internet.c
making iosupport.d from ../../../../R-3.5-branch/src/main/iosupport.c
making lapack.d from ../../../../R-3.5-branch/src/main/lapack.c
making list.d from ../../../../R-3.5-branch/src/main/list.c
making localecharset.d from ../../../../R-3.5-branch/src/main/localecharset.c
making logic.d from ../../../../R-3.5-branch/src/main/logic.c
making main.d from ../../../../R-3.5-branch/src/main/main.c
making mapply.d from ../../../../R-3.5-branch/src/main/mapply.c
making match.d from ../../../../R-3.5-branch/src/main/match.c
making memory.d from ../../../../R-3.5-branch/src/main/memory.c
making names.d from ../../../../R-3.5-branch/src/main/names.c
making objects.d from ../../../../R-3.5-branch/src/main/objects.c
making options.d from ../../../../R-3.5-branch/src/main/options.c
making paste.d from ../../../../R-3.5-branch/src/main/paste.c
making platform.d from ../../../../R-3.5-branch/src/main/platform.c
making plot.d from ../../../../R-3.5-branch/src/main/plot.c
making plot3d.d from ../../../../R-3.5-branch/src/main/plot3d.c
making plotmath.d from ../../../../R-3.5-branch/src/main/plotmath.c
making print.d from ../../../../R-3.5-branch/src/main/print.c
making printarray.d from ../../../../R-3.5-branch/src/main/printarray.c
making printvector.d from ../../../../R-3.5-branch/src/main/printvector.c
making printutils.d from ../../../../R-3.5-branch/src/main/printutils.c
making qsort.d from ../../../../R-3.5-branch/src/main/qsort.c
making random.d from ../../../../R-3.5-branch/src/main/random.c
making radixsort.d from ../../../../R-3.5-branch/src/main/radixsort.c
making raw.d from ../../../../R-3.5-branch/src/main/raw.c
making registration.d from ../../../../R-3.5-branch/src/main/registration.c
making relop.d from ../../../../R-3.5-branch/src/main/relop.c
making rlocale.d from ../../../../R-3.5-branch/src/main/rlocale.c
making saveload.d from ../../../../R-3.5-branch/src/main/saveload.c
making scan.d from ../../../../R-3.5-branch/src/main/scan.c
making seq.d from ../../../../R-3.5-branch/src/main/seq.c
making serialize.d from ../../../../R-3.5-branch/src/main/serialize.c
making sort.d from ../../../../R-3.5-branch/src/main/sort.c
making source.d from ../../../../R-3.5-branch/src/main/source.c
making split.d from ../../../../R-3.5-branch/src/main/split.c
making sprintf.d from ../../../../R-3.5-branch/src/main/sprintf.c
making startup.d from ../../../../R-3.5-branch/src/main/startup.c
making subassign.d from ../../../../R-3.5-branch/src/main/subassign.c
making subscript.d from ../../../../R-3.5-branch/src/main/subscript.c
making subset.d from ../../../../R-3.5-branch/src/main/subset.c
making summary.d from ../../../../R-3.5-branch/src/main/summary.c
making sysutils.d from ../../../../R-3.5-branch/src/main/sysutils.c
making times.d from ../../../../R-3.5-branch/src/main/times.c
making unique.d from ../../../../R-3.5-branch/src/main/unique.c
making util.d from ../../../../R-3.5-branch/src/main/util.c
making version.d from ../../../../R-3.5-branch/src/main/version.c
making g_alab_her.d from ../../../../R-3.5-branch/src/main/g_alab_her.c
making g_cntrlify.d from ../../../../R-3.5-branch/src/main/g_cntrlify.c
making g_fontdb.d from ../../../../R-3.5-branch/src/main/g_fontdb.c
making g_her_glyph.d from ../../../../R-3.5-branch/src/main/g_her_glyph.c
making Rmain.d from ../../../../R-3.5-branch/src/main/Rmain.c
making alloca.d from ../../../../R-3.5-branch/src/main/alloca.c
making mkdtemp.d from ../../../../R-3.5-branch/src/main/mkdtemp.c
making strdup.d from ../../../../R-3.5-branch/src/main/strdup.c
making strncasecmp.d from ../../../../R-3.5-branch/src/main/strncasecmp.c
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/CommandLineArgs.c -o CommandLineArgs.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/Rdynload.c -o Rdynload.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/Renviron.c -o Renviron.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/RNG.c -o RNG.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/agrep.c -o agrep.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/altrep.c -o altrep.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/apply.c -o apply.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/arithmetic.c -o arithmetic.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/array.c -o array.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/attrib.c -o attrib.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/bind.c -o bind.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/builtin.c -o builtin.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/character.c -o character.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/coerce.c -o coerce.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/colors.c -o colors.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/complex.c -o complex.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/connections.c -o connections.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/context.c -o context.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/cum.c -o cum.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/dcf.c -o dcf.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/datetime.c -o datetime.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/debug.c -o debug.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/deparse.c -o deparse.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/devices.c -o devices.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/dotcode.c -o dotcode.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/dounzip.c -o dounzip.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/dstruct.c -o dstruct.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/duplicate.c -o duplicate.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/edit.c -o edit.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/engine.c -o engine.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/envir.c -o envir.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/errors.c -o errors.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/eval.c -o eval.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/format.c -o format.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/gevents.c -o gevents.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/gram.c -o gram.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/gram-ex.c -o gram-ex.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/graphics.c -o graphics.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/grep.c -o grep.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/identical.c -o identical.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/inlined.c -o inlined.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/inspect.c -o inspect.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/internet.c -o internet.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/iosupport.c -o iosupport.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/lapack.c -o lapack.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/list.c -o list.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/localecharset.c -o localecharset.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/logic.c -o logic.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/main.c -o main.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/mapply.c -o mapply.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/match.c -o match.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/memory.c -o memory.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/names.c -o names.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/objects.c -o objects.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/options.c -o options.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/paste.c -o paste.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/platform.c -o platform.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/plot.c -o plot.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/plot3d.c -o plot3d.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/plotmath.c -o plotmath.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/print.c -o print.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/printarray.c -o printarray.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/printvector.c -o printvector.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/printutils.c -o printutils.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/qsort.c -o qsort.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/radixsort.c -o radixsort.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/random.c -o random.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/raw.c -o raw.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/registration.c -o registration.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/relop.c -o relop.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/rlocale.c -o rlocale.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/saveload.c -o saveload.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/scan.c -o scan.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/seq.c -o seq.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/serialize.c -o serialize.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/sort.c -o sort.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/source.c -o source.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/split.c -o split.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/sprintf.c -o sprintf.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/startup.c -o startup.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/subassign.c -o subassign.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/subscript.c -o subscript.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/subset.c -o subset.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/summary.c -o summary.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/sysutils.c -o sysutils.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/times.c -o times.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/unique.c -o unique.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/util.c -o util.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/version.c -o version.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/g_alab_her.c -o g_alab_her.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/g_cntrlify.c -o g_cntrlify.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/g_fontdb.c -o g_fontdb.o
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/g_her_glyph.c -o g_her_glyph.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../R-3.5-branch/src/main/xxxpr.f -o xxxpr.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -fopenmp -L/usr/local/lib -install_name libR.dylib -compatibility_version 3.5.0  -current_version 3.5.3  -headerpad_max_install_names -o libR.dylib CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a  ../extra/intl/libintl.a ../extra/tzone/libtz.a -L"../../lib" -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm    -Wl,-framework -Wl,CoreFoundation -lreadline  -lpcre -llzma -lbz2 -lz -licucore -lm -liconv  
mkdir /Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/bin/exec
clang -I../../../../R-3.5-branch/src/extra  -I. -I../../src/include -I../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.5-branch/src/nmath -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../R-3.5-branch/src/main/Rmain.c -o Rmain.o
clang -fopenmp  -L"../../lib" -L/usr/local/lib -o R.bin Rmain.o  -lR -lRblas
making Rhttpd.d from ../../../../../R-3.5-branch/src/modules/internet/Rhttpd.c
making Lapack.d from ../../../../../R-3.5-branch/src/modules/lapack/Lapack.c
making Rsock.d from ../../../../../R-3.5-branch/src/modules/internet/Rsock.c
making internet.d from ../../../../../R-3.5-branch/src/modules/internet/internet.c
making devX11.d from ../../../../../R-3.5-branch/src/modules/X11/devX11.c
making libcurl.d from ../../../../../R-3.5-branch/src/modules/internet/libcurl.c
making nanoftp.d from ../../../../../R-3.5-branch/src/modules/internet/nanoftp.c
making rotated.d from ../../../../../R-3.5-branch/src/modules/X11/rotated.c
making rbitmap.d from ../../../../../R-3.5-branch/src/modules/X11/rbitmap.c
making nanohttp.d from ../../../../../R-3.5-branch/src/modules/internet/nanohttp.c
making sock.d from ../../../../../R-3.5-branch/src/modules/internet/sock.c
making sockconn.d from ../../../../../R-3.5-branch/src/modules/internet/sockconn.c
gfortran -fPIC  -g -O2 -msse2 -mfpmath=sse -c ../../../../../R-3.5-branch/src/modules/lapack/dlamch.f -o dlamch.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../../R-3.5-branch/src/modules/lapack/dlapack.f -o dlapack.o
gfortran  -fopenmp -fPIC  -g -O2  -c ../../../../../R-3.5-branch/src/modules/lapack/cmplx.f -o cmplx.o
clang -I/opt/X11/include/libpng16  -I/usr/local/include  -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I/usr/X11/include -I/opt/X11/include/cairo -I/opt/X11/include/pixman-1 -I/opt/X11/include -I/opt/X11/include/freetype2 -I/opt/X11/include/libpng16 -I/opt/X11/include -I../../../../../R-3.5-branch/src/library/grDevices/src/cairo -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../../R-3.5-branch/src/modules/X11/devX11.c -o devX11.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.5-branch/src/modules/internet/Rhttpd.c -o Rhttpd.o
clang -I/opt/X11/include/libpng16  -I/usr/local/include  -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I/usr/X11/include -I/opt/X11/include/cairo -I/opt/X11/include/pixman-1 -I/opt/X11/include -I/opt/X11/include/freetype2 -I/opt/X11/include/libpng16 -I/opt/X11/include -I../../../../../R-3.5-branch/src/library/grDevices/src/cairo -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../../R-3.5-branch/src/modules/X11/rotated.c -o rotated.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.5-branch/src/modules/internet/Rsock.c -o Rsock.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.5-branch/src/modules/internet/internet.c -o internet.o
clang -I/opt/X11/include/libpng16  -I/usr/local/include  -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I/usr/X11/include -I/opt/X11/include/cairo -I/opt/X11/include/pixman-1 -I/opt/X11/include -I/opt/X11/include/freetype2 -I/opt/X11/include/libpng16 -I/opt/X11/include -I../../../../../R-3.5-branch/src/library/grDevices/src/cairo -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../../R-3.5-branch/src/modules/X11/rbitmap.c -o rbitmap.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.5-branch/src/modules/internet/libcurl.c -o libcurl.o
clang -I/opt/X11/include/libpng16  -I/usr/local/include  -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -I/usr/X11/include -I/opt/X11/include/cairo -I/opt/X11/include/pixman-1 -I/opt/X11/include -I/opt/X11/include/freetype2 -I/opt/X11/include/libpng16 -I/opt/X11/include -I../../../../../R-3.5-branch/src/library/grDevices/src/cairo -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../../R-3.5-branch/src/modules/X11/dataentry.c -o dataentry.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.5-branch/src/modules/internet/nanoftp.c -o nanoftp.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.5-branch/src/modules/internet/nanohttp.c -o nanohttp.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.5-branch/src/modules/internet/sock.c -o sock.o
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2    -c ../../../../../R-3.5-branch/src/modules/internet/sockconn.c -o sockconn.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L"../../../lib" -L/usr/local/lib -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -lcurl -lR   -Wl,-framework -Wl,CoreFoundation
mkdir /Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/modules
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L"../../../lib" -L/usr/local/lib -o R_X11.so devX11.o rotated.o rbitmap.o -L/usr/local/lib -ltiff  -ljpeg -L/opt/X11/lib -lpng16  -lSM -lICE -L/opt/X11/lib -lz -lcairo -lz -lpixman-1 -lfontconfig -lexpat -lfreetype -lz -lbz2 -lpng16 -lz -lxcb-shm -lX11-xcb -lxcb-render -lXrender -lXext -lX11 -lxcb -lXau -lXdmcp  -L/opt/X11/lib -lX11 -lXt -lXmu  -lR   -Wl,-framework -Wl,CoreFoundation
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L"../../../lib" -L/usr/local/lib -o R_de.so dataentry.o -lSM -lICE -L/opt/X11/lib -lz -lcairo -lz -lpixman-1 -lfontconfig -lexpat -lfreetype -lz -lbz2 -lpng16 -lz -lxcb-shm -lX11-xcb -lxcb-render -lXrender -lXext -lX11 -lxcb -lXau -lXdmcp  -L/opt/X11/lib -lX11 -lXt -lXmu  -lR   -Wl,-framework -Wl,CoreFoundation
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -fopenmp -L/usr/local/lib -o libRlapack.dylib dlamch.o dlapack.o cmplx.o  -install_name libRlapack.dylib -compatibility_version 3.5.0 -current_version 3.5.3  -headerpad_max_install_names -L"../../../lib" -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm  -L"../../../lib" -lR

ld: warning: could not create compact unwind for _zhseqr_: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for _dpbtrf_: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for _dhseqr_: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for _dgbtrf_: stack subq instruction is too different from dwarf stack size
clang -I. -I../../../src/include -I../../../../../R-3.5-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../../R-3.5-branch/src/modules/lapack/Lapack.c -o Lapack.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L"../../../lib" -L/usr/local/lib -o lapack.so  Lapack.o  -lR  -Wl,-framework -Wl,CoreFoundation -L"../../../lib" -lRlapack -L"../../../lib" -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm
/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib/libRlapack.dylib is unchanged
mkdir ../../library
building system startup profile
mkdir ../../../library/base
mkdir ../../../library/base/R
building package 'translations'
mkdir ../../../library/translations
building package 'base'
mkdir ../../../library/base/demo

mv: all.R: set owner/group (was: 501/0): Operation not permitted
building package 'tools'
mkdir ../../../library/tools
mkdir ../../../library/tools/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
making text.d from ../../../../../../R-3.5-branch/src/library/tools/src/text.c
making init.d from ../../../../../../R-3.5-branch/src/library/tools/src/init.c
making Rmd5.d from ../../../../../../R-3.5-branch/src/library/tools/src/Rmd5.c
making md5.d from ../../../../../../R-3.5-branch/src/library/tools/src/md5.c
making install.d from ../../../../../../R-3.5-branch/src/library/tools/src/install.c
making signals.d from ../../../../../../R-3.5-branch/src/library/tools/src/signals.c
making getfmts.d from ../../../../../../R-3.5-branch/src/library/tools/src/getfmts.c
making http.d from ../../../../../../R-3.5-branch/src/library/tools/src/http.c
making gramLatex.d from ../../../../../../R-3.5-branch/src/library/tools/src/gramLatex.c
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/tools/src/text.c -o text.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/tools/src/init.c -o init.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/tools/src/Rmd5.c -o Rmd5.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/tools/src/md5.c -o md5.o
making gramRd.d from ../../../../../../R-3.5-branch/src/library/tools/src/gramRd.c
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/tools/src/signals.c -o signals.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/tools/src/install.c -o install.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/tools/src/getfmts.c -o getfmts.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/tools/src/http.c -o http.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/tools/src/gramLatex.c -o gramLatex.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/tools/src/gramRd.c -o gramRd.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/tools/libs
installing 'sysdata.rda'
building package 'compiler'
mkdir ../../../library/compiler
mkdir ../../../library/compiler/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
byte-compiling package 'compiler'
byte-compiling package 'base'
byte-compiling package 'tools'
building package 'utils'
mkdir ../../../library/utils
mkdir ../../../library/utils/doc
mkdir ../../../library/utils/R
mkdir ../../../library/utils/Sweave
mkdir ../../../library/utils/misc

mv: all.R: set owner/group (was: 501/0): Operation not permitted
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/utils/src/init.c -o init.o
making init.d from ../../../../../../R-3.5-branch/src/library/utils/src/init.c
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/utils/src/io.c -o io.o
making io.d from ../../../../../../R-3.5-branch/src/library/utils/src/io.c
making size.d from ../../../../../../R-3.5-branch/src/library/utils/src/size.c
making sock.d from ../../../../../../R-3.5-branch/src/library/utils/src/sock.c
making stubs.d from ../../../../../../R-3.5-branch/src/library/utils/src/stubs.c
making utils.d from ../../../../../../R-3.5-branch/src/library/utils/src/utils.c
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/utils/src/size.c -o size.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/utils/src/sock.c -o sock.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/utils/src/stubs.c -o stubs.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/utils/src/utils.c -o utils.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/utils/libs
installing 'sysdata.rda'
byte-compiling package 'utils'
building package 'grDevices'
mkdir ../../../library/grDevices
mkdir ../../../library/grDevices/R
mkdir ../../../library/grDevices/afm

mv: all.R: set owner/group (was: 501/0): Operation not permitted
mkdir ../../../library/grDevices/enc
mkdir ../../../library/grDevices/icc
making axis_scales.d from ../../../../../../R-3.5-branch/src/library/grDevices/src/axis_scales.c
making chull.d from ../../../../../../R-3.5-branch/src/library/grDevices/src/chull.c
making devices.d from ../../../../../../R-3.5-branch/src/library/grDevices/src/devices.c
making init.d from ../../../../../../R-3.5-branch/src/library/grDevices/src/init.c
making stubs.d from ../../../../../../R-3.5-branch/src/library/grDevices/src/stubs.c
making colors.d from ../../../../../../R-3.5-branch/src/library/grDevices/src/colors.c
making devCairo.d from ../../../../../../R-3.5-branch/src/library/grDevices/src/devCairo.c
making devPicTeX.d from ../../../../../../R-3.5-branch/src/library/grDevices/src/devPicTeX.c
making devPS.d from ../../../../../../R-3.5-branch/src/library/grDevices/src/devPS.c
making devQuartz.d from ../../../../../../R-3.5-branch/src/library/grDevices/src/devQuartz.c
making qdBitmap.d from ../../../../../../R-3.5-branch/src/library/grDevices/src/qdBitmap.c
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/grDevices/src/axis_scales.c -o axis_scales.o
making qdPDF.d from ../../../../../../R-3.5-branch/src/library/grDevices/src/qdPDF.c
making qdCocoa.d from ../../../../../../R-3.5-branch/src/library/grDevices/src/qdCocoa.m
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/grDevices/src/chull.c -o chull.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/grDevices/src/devices.c -o devices.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/grDevices/src/init.c -o init.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/grDevices/src/stubs.c -o stubs.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/grDevices/src/colors.c -o colors.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/grDevices/src/devCairo.c -o devCairo.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/grDevices/src/devPicTeX.c -o devPicTeX.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/grDevices/src/devPS.c -o devPS.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/grDevices/src/devQuartz.c -o devQuartz.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/grDevices/src/qdBitmap.c -o qdBitmap.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/grDevices/src/qdPDF.c -o qdPDF.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2 -fobjc-exceptions  -c ../../../../../../R-3.5-branch/src/library/grDevices/src/qdCocoa.m -o qdCocoa.o

../../../../../../R-3.5-branch/src/library/grDevices/src/qdBitmap.c:61:39: warning: 'CFURLCreateStringByAddingPercentEscapes' is deprecated: first deprecated in macOS 10.11 - Use [NSString stringByAddingPercentEncodingWithAllowedCharacters:] instead, which always uses the recommended UTF-8 encoding, and which encodes for a specific URL component or subcomponent (since each URL component or subcomponent has different rules for what characters are valid). [-Wdeprecated-declarations]
            CFStringRef pathEscaped = CFURLCreateStringByAddingPercentEscapes(kCFAllocatorDefault, pathString, NULL, NULL, kCFStringEncodingUTF8);
                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreFoundation.framework/Headers/CFURL.h:395:13: note: 'CFURLCreateStringByAddingPercentEscapes' has been explicitly marked deprecated here
CFStringRef CFURLCreateStringByAddingPercentEscapes(CFAllocatorRef allocator, CFStringRef originalString, CFStringRef charactersToLeaveUnescaped, CFStringRef legalURLCharactersToBeEscaped, CFStringEncoding encoding) CF_DEPRECATED(10_0, 10_11, 2_0, 9_0, "Use [NSString stringByAddingPercentEncodingWithAllowedCharacters:] instead, which always uses the recommended UTF-8 encoding, and which encodes for a specific URL component or subcomponent (since each URL component or subcomponent has different rules for what characters are valid).");
            ^
../../../../../../R-3.5-branch/src/library/grDevices/src/devQuartz.c:646:23: warning: 'ATSFontFindFromName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations]
            atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault);
                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here
ATSFontFindFromName(
^
../../../../../../R-3.5-branch/src/library/grDevices/src/devQuartz.c:648:27: warning: 'ATSFontFindFromPostScriptName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations]
                atsFont = ATSFontFindFromPostScriptName(cfFontName, kATSOptionFlagsDefault);
                          ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:820:1: note: 'ATSFontFindFromPostScriptName' has been explicitly marked deprecated here
ATSFontFindFromPostScriptName(
^
../../../../../../R-3.5-branch/src/library/grDevices/src/devQuartz.c:675:27: warning: 'ATSFontFindFromName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations]
                atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault);
                          ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here
ATSFontFindFromName(
^
../../../../../../R-3.5-branch/src/library/grDevices/src/devQuartz.c:676:41: warning: 'ATSFontFindFromPostScriptName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations]
                if (!atsFont) atsFont = ATSFontFindFromPostScriptName(cfFontName, kATSOptionFlagsDefault);
                                        ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:820:1: note: 'ATSFontFindFromPostScriptName' has been explicitly marked deprecated here
ATSFontFindFromPostScriptName(
^
../../../../../../R-3.5-branch/src/library/grDevices/src/devQuartz.c:682:35: warning: 'ATSFontFindFromName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations]
                        atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault);
                                  ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here
ATSFontFindFromName(
^
../../../../../../R-3.5-branch/src/library/grDevices/src/devQuartz.c:688:39: warning: 'ATSFontFindFromName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations]
                            atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault);
                                      ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here
ATSFontFindFromName(
^
../../../../../../R-3.5-branch/src/library/grDevices/src/devQuartz.c:696:35: warning: 'ATSFontFindFromName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations]
                        atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault);
                                  ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here
ATSFontFindFromName(
^
../../../../../../R-3.5-branch/src/library/grDevices/src/devQuartz.c:715:12: warning: 'CGFontCreateWithPlatformFont' is deprecated: first deprecated in macOS 10.6 [-Wdeprecated-declarations]
    return CGFontCreateWithPlatformFont(&atsFont);
           ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreGraphics.framework/Headers/CGFont.h:64:32: note: 'CGFontCreateWithPlatformFont' has been explicitly marked deprecated here
CG_EXTERN CGFontRef __nullable CGFontCreateWithPlatformFont(
                               ^
../../../../../../R-3.5-branch/src/library/grDevices/src/devQuartz.c:997:5: warning: 'CGContextShowGlyphsWithAdvances' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations]
    CGContextShowGlyphsWithAdvances(ctx,glyphs, g_adv, len);
    ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreGraphics.framework/Headers/CGContext.h:1066:16: note: 'CGContextShowGlyphsWithAdvances' has been explicitly marked deprecated here
CG_EXTERN void CGContextShowGlyphsWithAdvances(CGContextRef __nullable c,
               ^
1 warning generated.
../../../../../../R-3.5-branch/src/library/grDevices/src/qdCocoa.m:101:23: warning: sending 'QuartzCocoaView *' to parameter of incompatible type 'id _Nullable'
        [window setDelegate: view];
                             ^~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSWindow.h:317:51: note: passing argument to parameter 'delegate' here
@property (nullable, assign) id delegate;
                                                  ^
../../../../../../R-3.5-branch/src/library/grDevices/src/qdCocoa.m:85:14: warning: unused variable 'canvasColor' [-Wunused-variable]
    NSColor* canvasColor = nil;
             ^
../../../../../../R-3.5-branch/src/library/grDevices/src/qdCocoa.m:268:6: warning: 'setRequiredFileType:' is deprecated: first deprecated in macOS 10.6 [-Wdeprecated-declarations]
        [sp setRequiredFileType:@"pdf"];
            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSSavePanel.h:289:1: note: 'setRequiredFileType:' has been explicitly marked deprecated here
- (void)setRequiredFileType:(nullable NSString *)type NS_DEPRECATED_MAC(10_0, 10_6);
^
../../../../../../R-3.5-branch/src/library/grDevices/src/qdCocoa.m:270:19: warning: 'runModalForDirectory:file:' is deprecated: first deprecated in macOS 10.6 [-Wdeprecated-declarations]
        int answer = [sp runModalForDirectory:nil file:@"Rplot.pdf"];
                         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSSavePanel.h:297:1: note: 'runModalForDirectory:file:' has been explicitly marked deprecated here
- (NSInteger)runModalForDirectory:(nullable NSString *)path file:(nullable NSString *)name NS_DEPRECATED_MAC(10_0, 10_6);
^
../../../../../../R-3.5-branch/src/library/grDevices/src/qdCocoa.m:271:15: warning: 'NSOKButton' is deprecated: first deprecated in macOS 10.10 - Use NSModalResponseOK instead [-Wdeprecated-declarations]
        if(answer == NSOKButton)
                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSPanel.h:85:5: note: 'NSOKButton' has been explicitly marked deprecated here
    NSOKButton NS_ENUM_DEPRECATED_MAC(10_0, 10_10, "Use NSModalResponseOK instead") = 1, // NSModalResponseOK should be used instead (in NSWindow)
    ^
../../../../../../R-3.5-branch/src/library/grDevices/src/qdCocoa.m:272:29: warning: 'filename' is deprecated: first deprecated in macOS 10.6 [-Wdeprecated-declarations]
                if (![self writeAsPDF:[sp filename]]) NSBeep();
                                          ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSSavePanel.h:279:1: note: 'filename' has been explicitly marked deprecated here
- (NSString *)filename NS_DEPRECATED_MAC(10_0, 10_6);
^
../../../../../../R-3.5-branch/src/library/grDevices/src/qdCocoa.m:615:13: warning: 'GetFrontProcess' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations]
        if (GetFrontProcess(&frProc) == noErr) {
            ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:434:1: note: 'GetFrontProcess' has been explicitly marked deprecated here
GetFrontProcess(ProcessSerialNumber * PSN)                    AVAILABLE_MAC_OS_X_VERSION_10_0_AND_LATER_BUT_DEPRECATED_IN_MAC_OS_X_VERSION_10_9;
^
../../../../../../R-3.5-branch/src/library/grDevices/src/qdCocoa.m:616:17: warning: 'GetCurrentProcess' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations]
            if (GetCurrentProcess(&myProc) == noErr) {
                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:415:1: note: 'GetCurrentProcess' has been explicitly marked deprecated here
MacGetCurrentProcess(ProcessSerialNumber * PSN)               AVAILABLE_MAC_OS_X_VERSION_10_0_AND_LATER_BUT_DEPRECATED_IN_MAC_OS_X_VERSION_10_9;
^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:412:34: note: expanded from macro 'MacGetCurrentProcess'
    #define MacGetCurrentProcess GetCurrentProcess
                                 ^
../../../../../../R-3.5-branch/src/library/grDevices/src/qdCocoa.m:617:21: warning: 'SameProcess' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations]
                if (SameProcess(&frProc, &myProc, &sameProc) == noErr && !sameProc) {
                    ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:696:1: note: 'SameProcess' has been explicitly marked deprecated here
SameProcess(
^
../../../../../../R-3.5-branch/src/library/grDevices/src/qdCocoa.m:620:17: warning: 'SetFrontProcess' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations]
                SetFrontProcess(&myProc);
                ^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:603:1: note: 'SetFrontProcess' has been explicitly marked deprecated here
SetFrontProcess(const ProcessSerialNumber * PSN)              AVAILABLE_MAC_OS_X_VERSION_10_0_AND_LATER_BUT_DEPRECATED_IN_MAC_OS_X_VERSION_10_9;
^
9 warnings generated.
10 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o qdBitmap.o qdPDF.o qdCocoa.o -framework AppKit -lz -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/grDevices/libs
making cairoBM.d from ../../../../../../../R-3.5-branch/src/library/grDevices/src/cairo/cairoBM.c
clang -I. -I../../../../../src/include -I../../../../../../../R-3.5-branch/src/include -I/opt/X11/include/cairo -I/opt/X11/include/pixman-1 -I/opt/X11/include -I/opt/X11/include/freetype2 -I/opt/X11/include/libpng16 -I/opt/X11/include -I../../../../../../../R-3.5-branch/src/modules/X11 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H   -fopenmp -fPIC  -Wall -g -O2  -c ../../../../../../../R-3.5-branch/src/library/grDevices/src/cairo/cairoBM.c -o cairoBM.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L"../../../../../lib" -L/usr/local/lib -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -L/usr/local/lib -ltiff  -ljpeg -L/opt/X11/lib -lpng16  -L/opt/X11/lib -lz -lcairo -lz -lpixman-1 -lfontconfig -lexpat -lfreetype -lz -lbz2 -lpng16 -lz -lxcb-shm -lX11-xcb -lxcb-render -lXrender -lXext -lX11 -lxcb -lXau -lXdmcp  -L"../../../../../lib" -lR   -Wl,-framework -Wl,CoreFoundation
byte-compiling package 'grDevices'
building package 'graphics'
mkdir ../../../library/graphics
mkdir ../../../library/graphics/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
making init.d from ../../../../../../R-3.5-branch/src/library/graphics/src/init.c
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/graphics/src/init.c -o init.o
making base.d from ../../../../../../R-3.5-branch/src/library/graphics/src/base.c
making graphics.d from ../../../../../../R-3.5-branch/src/library/graphics/src/graphics.c
making par.d from ../../../../../../R-3.5-branch/src/library/graphics/src/par.c
making plot3d.d from ../../../../../../R-3.5-branch/src/library/graphics/src/plot3d.c
making plot.d from ../../../../../../R-3.5-branch/src/library/graphics/src/plot.c
making stem.d from ../../../../../../R-3.5-branch/src/library/graphics/src/stem.c
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/graphics/src/base.c -o base.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/graphics/src/graphics.c -o graphics.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/graphics/src/par.c -o par.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/graphics/src/plot.c -o plot.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/graphics/src/plot3d.c -o plot3d.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.5-branch/src/main  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/graphics/src/stem.c -o stem.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/graphics/libs
byte-compiling package 'graphics'
building package 'stats'
mkdir ../../../library/stats
mkdir ../../../library/stats/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
making init.d from ../../../../../../R-3.5-branch/src/library/stats/src/init.c
making kmeans.d from ../../../../../../R-3.5-branch/src/library/stats/src/kmeans.c
making bandwidths.d from ../../../../../../R-3.5-branch/src/library/stats/src/bandwidths.c
making chisqsim.d from ../../../../../../R-3.5-branch/src/library/stats/src/chisqsim.c
making ansari.d from ../../../../../../R-3.5-branch/src/library/stats/src/ansari.c
making d2x2xk.d from ../../../../../../R-3.5-branch/src/library/stats/src/d2x2xk.c
making fexact.d from ../../../../../../R-3.5-branch/src/library/stats/src/fexact.c
making kendall.d from ../../../../../../R-3.5-branch/src/library/stats/src/kendall.c
making ks.d from ../../../../../../R-3.5-branch/src/library/stats/src/ks.c
making line.d from ../../../../../../R-3.5-branch/src/library/stats/src/line.c
making smooth.d from ../../../../../../R-3.5-branch/src/library/stats/src/smooth.c
making prho.d from ../../../../../../R-3.5-branch/src/library/stats/src/prho.c
making swilk.d from ../../../../../../R-3.5-branch/src/library/stats/src/swilk.c
making loessc.d from ../../../../../../R-3.5-branch/src/library/stats/src/loessc.c
making ksmooth.d from ../../../../../../R-3.5-branch/src/library/stats/src/ksmooth.c
making monoSpl.d from ../../../../../../R-3.5-branch/src/library/stats/src/monoSpl.c
making isoreg.d from ../../../../../../R-3.5-branch/src/library/stats/src/isoreg.c
making Srunmed.d from ../../../../../../R-3.5-branch/src/library/stats/src/Srunmed.c
making dblcen.d from ../../../../../../R-3.5-branch/src/library/stats/src/dblcen.c
making distance.d from ../../../../../../R-3.5-branch/src/library/stats/src/distance.c
making hclust-utils.d from ../../../../../../R-3.5-branch/src/library/stats/src/hclust-utils.c
making nls.d from ../../../../../../R-3.5-branch/src/library/stats/src/nls.c
making rWishart.d from ../../../../../../R-3.5-branch/src/library/stats/src/rWishart.c
making HoltWinters.d from ../../../../../../R-3.5-branch/src/library/stats/src/HoltWinters.c
making PPsum.d from ../../../../../../R-3.5-branch/src/library/stats/src/PPsum.c
making arima.d from ../../../../../../R-3.5-branch/src/library/stats/src/arima.c
making burg.d from ../../../../../../R-3.5-branch/src/library/stats/src/burg.c
making filter.d from ../../../../../../R-3.5-branch/src/library/stats/src/filter.c
making mAR.d from ../../../../../../R-3.5-branch/src/library/stats/src/mAR.c
making pacf.d from ../../../../../../R-3.5-branch/src/library/stats/src/pacf.c
making starma.d from ../../../../../../R-3.5-branch/src/library/stats/src/starma.c
making port.d from ../../../../../../R-3.5-branch/src/library/stats/src/port.c
making family.d from ../../../../../../R-3.5-branch/src/library/stats/src/family.c
making sbart.d from ../../../../../../R-3.5-branch/src/library/stats/src/sbart.c
making approx.d from ../../../../../../R-3.5-branch/src/library/stats/src/approx.c
making loglin.d from ../../../../../../R-3.5-branch/src/library/stats/src/loglin.c
making lowess.d from ../../../../../../R-3.5-branch/src/library/stats/src/lowess.c
making massdist.d from ../../../../../../R-3.5-branch/src/library/stats/src/massdist.c
making splines.d from ../../../../../../R-3.5-branch/src/library/stats/src/splines.c
making lm.d from ../../../../../../R-3.5-branch/src/library/stats/src/lm.c
making complete_cases.d from ../../../../../../R-3.5-branch/src/library/stats/src/complete_cases.c
making cov.d from ../../../../../../R-3.5-branch/src/library/stats/src/cov.c
making deriv.d from ../../../../../../R-3.5-branch/src/library/stats/src/deriv.c
making fft.d from ../../../../../../R-3.5-branch/src/library/stats/src/fft.c
making fourier.d from ../../../../../../R-3.5-branch/src/library/stats/src/fourier.c
making model.d from ../../../../../../R-3.5-branch/src/library/stats/src/model.c
making optim.d from ../../../../../../R-3.5-branch/src/library/stats/src/optim.c
making optimize.d from ../../../../../../R-3.5-branch/src/library/stats/src/optimize.c
making integrate.d from ../../../../../../R-3.5-branch/src/library/stats/src/integrate.c
making random.d from ../../../../../../R-3.5-branch/src/library/stats/src/random.c
making distn.d from ../../../../../../R-3.5-branch/src/library/stats/src/distn.c
making zeroin.d from ../../../../../../R-3.5-branch/src/library/stats/src/zeroin.c
making rcont.d from ../../../../../../R-3.5-branch/src/library/stats/src/rcont.c
making influence.d from ../../../../../../R-3.5-branch/src/library/stats/src/influence.c
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/init.c -o init.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/kmeans.c -o kmeans.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/ansari.c -o ansari.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/bandwidths.c -o bandwidths.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/chisqsim.c -o chisqsim.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/d2x2xk.c -o d2x2xk.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/fexact.c -o fexact.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/kendall.c -o kendall.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/ks.c -o ks.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/line.c -o line.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/smooth.c -o smooth.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/prho.c -o prho.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/swilk.c -o swilk.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/ksmooth.c -o ksmooth.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/loessc.c -o loessc.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/monoSpl.c -o monoSpl.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/isoreg.c -o isoreg.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/Srunmed.c -o Srunmed.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/dblcen.c -o dblcen.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/distance.c -o distance.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/hclust-utils.c -o hclust-utils.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/nls.c -o nls.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/rWishart.c -o rWishart.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/HoltWinters.c -o HoltWinters.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/PPsum.c -o PPsum.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/arima.c -o arima.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/burg.c -o burg.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/filter.c -o filter.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/mAR.c -o mAR.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/pacf.c -o pacf.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/starma.c -o starma.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/port.c -o port.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/family.c -o family.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/sbart.c -o sbart.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/approx.c -o approx.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/loglin.c -o loglin.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/lowess.c -o lowess.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/massdist.c -o massdist.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/splines.c -o splines.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/lm.c -o lm.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/complete_cases.c -o complete_cases.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/cov.c -o cov.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/deriv.c -o deriv.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/fft.c -o fft.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/fourier.c -o fourier.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/model.c -o model.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/optim.c -o optim.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/optimize.c -o optimize.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/integrate.c -o integrate.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/random.c -o random.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/distn.c -o distn.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/zeroin.c -o zeroin.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/rcont.c -o rcont.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp  -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/influence.c -o influence.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/bsplvd.f -o bsplvd.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/bvalue.f -o bvalue.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/bvalus.f -o bvalus.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/loessf.f -o loessf.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/ppr.f -o ppr.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/qsbart.f -o qsbart.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/sgram.f -o sgram.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/sinerp.f -o sinerp.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/sslvrg.f -o sslvrg.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/stxwx.f -o stxwx.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/hclust.f -o hclust.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/kmns.f -o kmns.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/eureka.f -o eureka.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/stl.f -o stl.o
gfortran -fPIC  -g -O2 -msse2 -mfpmath=sse -c ../../../../../../R-3.5-branch/src/library/stats/src/portsrc.f -o portsrc.o
gfortran   -fPIC  -g -O2  -c ../../../../../../R-3.5-branch/src/library/stats/src/lminfl.f -o lminfl.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -L../../../../lib -lRlapack -L../../../../lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation

ld: warning: ld: warning: could not create compact unwind for _splineaa_: stack subq instruction is too different from dwarf stack sizecould not create compact unwind for _ehg136_: stack subq instruction is too different from dwarf stack size

ld: warning: could not create compact unwind for _ehg139_: stack subq instruction is too different from dwarf stack size
mkdir ../../../../library/stats/libs
byte-compiling package 'stats'
building package 'datasets'
mkdir ../../../library/datasets
mkdir ../../../library/datasets/data
building package 'methods'
mkdir ../../../library/methods
mkdir ../../../library/methods/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
making do_substitute_direct.d from ../../../../../../R-3.5-branch/src/library/methods/src/do_substitute_direct.c
making init.d from ../../../../../../R-3.5-branch/src/library/methods/src/init.c
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/methods/src/do_substitute_direct.c -o do_substitute_direct.o
making slot.d from ../../../../../../R-3.5-branch/src/library/methods/src/slot.c
making methods_list_dispatch.d from ../../../../../../R-3.5-branch/src/library/methods/src/methods_list_dispatch.c
making class_support.d from ../../../../../../R-3.5-branch/src/library/methods/src/class_support.c
making tests.d from ../../../../../../R-3.5-branch/src/library/methods/src/tests.c
making utils.d from ../../../../../../R-3.5-branch/src/library/methods/src/utils.c
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/methods/src/init.c -o init.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/methods/src/methods_list_dispatch.c -o methods_list_dispatch.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/methods/src/slot.c -o slot.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/methods/src/class_support.c -o class_support.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/methods/src/tests.c -o tests.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/methods/src/utils.c -o utils.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/methods/libs
byte-compiling 'methods'
initializing class and method definitions ... done
building package 'grid'
mkdir ../../../library/grid
mkdir ../../../library/grid/doc
mkdir ../../../library/grid/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
making gpar.d from ../../../../../../R-3.5-branch/src/library/grid/src/gpar.c
making grid.d from ../../../../../../R-3.5-branch/src/library/grid/src/grid.c
making layout.d from ../../../../../../R-3.5-branch/src/library/grid/src/layout.c
making just.d from ../../../../../../R-3.5-branch/src/library/grid/src/just.c
making matrix.d from ../../../../../../R-3.5-branch/src/library/grid/src/matrix.c
making register.d from ../../../../../../R-3.5-branch/src/library/grid/src/register.c
making state.d from ../../../../../../R-3.5-branch/src/library/grid/src/state.c
making unit.d from ../../../../../../R-3.5-branch/src/library/grid/src/unit.c
clang -I"../../../../include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/grid/src/gpar.c -o gpar.o
clang -I"../../../../include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/grid/src/grid.c -o grid.o
clang -I"../../../../include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/grid/src/just.c -o just.o
making util.d from ../../../../../../R-3.5-branch/src/library/grid/src/util.c
making viewport.d from ../../../../../../R-3.5-branch/src/library/grid/src/viewport.c
clang -I"../../../../include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/grid/src/layout.c -o layout.o
clang -I"../../../../include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/grid/src/matrix.c -o matrix.o
clang -I"../../../../include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/grid/src/register.c -o register.o
clang -I"../../../../include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/grid/src/state.c -o state.o
clang -I"../../../../include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/grid/src/unit.c -o unit.o
clang -I"../../../../include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/grid/src/util.c -o util.o
clang -I"../../../../include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/grid/src/viewport.c -o viewport.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/grid/libs
byte-compiling package 'grid'
building package 'splines'
mkdir ../../../library/splines
mkdir ../../../library/splines/R

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clang -I"../../../../include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/splines/src/splines.c -o splines.o
making splines.d from ../../../../../../R-3.5-branch/src/library/splines/src/splines.c
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o splines.so splines.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/splines/libs
byte-compiling package 'splines'
building package 'stats4'
mkdir ../../../library/stats4
mkdir ../../../library/stats4/R

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byte-compiling package 'stats4'
building package 'tcltk'
mkdir ../../../library/tcltk
mkdir ../../../library/tcltk/R

mv: all.R: set owner/group (was: 501/0): Operation not permitted
mkdir ../../../library/tcltk/exec
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include -I/opt/X11/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/tcltk/src/init.c -o init.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include -I/opt/X11/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/tcltk/src/tcltk.c -o tcltk.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include -I/opt/X11/include  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/tcltk/src/tcltk_unix.c -o tcltk_unix.o
making init.d from ../../../../../../R-3.5-branch/src/library/tcltk/src/init.c
making tcltk.d from ../../../../../../R-3.5-branch/src/library/tcltk/src/tcltk.c
making tcltk_unix.d from ../../../../../../R-3.5-branch/src/library/tcltk/src/tcltk_unix.c
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/local/lib -ltcl8.6 -L/usr/local/lib -ltk8.6 -L/opt/X11/lib -lX11 -Wl,-weak-lXss -lXext -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/tcltk/libs
byte-compiling package 'tcltk'
building package 'parallel'
mkdir ../../../library/parallel
mkdir ../../../library/parallel/doc
mkdir ../../../library/parallel/R

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clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/parallel/src/init.c -o init.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/parallel/src/rngstream.c -o rngstream.o
clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.5-branch/src/include -DHAVE_CONFIG_H  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../../../../../../R-3.5-branch/src/library/parallel/src/fork.c -o fork.o
making init.d from ../../../../../../R-3.5-branch/src/library/parallel/src/init.c
making fork.d from ../../../../../../R-3.5-branch/src/library/parallel/src/fork.c
making rngstream.d from ../../../../../../R-3.5-branch/src/library/parallel/src/rngstream.c
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
mkdir ../../../../library/parallel/libs
byte-compiling package 'parallel'
installing parsed NAMESPACE files
make[1]: Nothing to be done for `R'.
you should 'make docs' now ...
configuring Java ...
Java interpreter : /usr/bin/java
Java version     : 11.0.1
Java home path   : /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home
Java compiler    : /usr/bin/javac
Java headers gen.: /usr/bin/javah
Java archive tool: /usr/bin/jar

trying to compile and link a JNI program 
detected JNI cpp flags    : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/darwin
detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I/Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/include/darwin  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c conftest.c -o conftest.o
creating doc/NEWS
creating doc/NEWS.pdf
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -L/usr/local/lib -o conftest.so conftest.o -L/Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server -ljvm -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -lR -Wl,-framework -Wl,CoreFoundation


JAVA_HOME        : /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home
Java library path: $(JAVA_HOME)/lib/server
JNI cpp flags    : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/darwin
JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm
Updating Java configuration in /Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch
Done.

creating doc/manual/R-FAQ.html
creating doc/manual/version.texi
mkdir ../../doc/manual/images
creating doc/manual/R-admin.html
creating doc/manual/R-exts.html
creating doc/manual/R-data.html
creating doc/manual/R-intro.html
creating doc/manual/R-lang.html
creating doc/manual/R-ints.html
installing parsed Rd
  datasets
  grid
  grDevices
  tcltk
  splines
  graphics
  compiler
  methods
  stats4
  tools
  parallel
  utils
  stats
  base
building/updating package metadata ...
writing package indices
begin installing recommended package MASS
begin installing recommended package codetools
begin installing recommended package lattice
begin installing recommended package foreign
begin installing recommended package KernSmooth
begin installing recommended package rpart
begin installing recommended package nnet
begin installing recommended package spatial
* installing *source* package 'codetools' ...
** package 'codetools' successfully unpacked and MD5 sums checked
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (codetools)
* installing *source* package 'nnet' ...
** package 'nnet' successfully unpacked and MD5 sums checked
** libs
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c nnet.c -o nnet.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -L/usr/local/lib -o nnet.so nnet.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.5-branch/library/nnet/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (nnet)
* installing *source* package 'spatial' ...
** package 'spatial' successfully unpacked and MD5 sums checked
** libs
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c krc.c -o krc.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c pps.c -o pps.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -L/usr/local/lib -o spatial.so init.o krc.o pps.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.5-branch/library/spatial/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (spatial)
* installing *source* package 'KernSmooth' ...
** package 'KernSmooth' successfully unpacked and MD5 sums checked
** libs
gfortran   -fPIC  -g -O2  -c blkest.f -o blkest.o
gfortran   -fPIC  -g -O2  -c cp.f -o cp.o
gfortran   -fPIC  -g -O2  -c dgedi.f -o dgedi.o
gfortran   -fPIC  -g -O2  -c dgefa.f -o dgefa.o
gfortran   -fPIC  -g -O2  -c dgesl.f -o dgesl.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
gfortran   -fPIC  -g -O2  -c linbin.f -o linbin.o
gfortran   -fPIC  -g -O2  -c linbin2D.f -o linbin2D.o
gfortran   -fPIC  -g -O2  -c locpoly.f -o locpoly.o
gfortran   -fPIC  -g -O2  -c rlbin.f -o rlbin.o
gfortran   -fPIC  -g -O2  -c sdiag.f -o sdiag.o
gfortran   -fPIC  -g -O2  -c sstdiag.f -o sstdiag.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -L/usr/local/lib -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.5-branch/library/KernSmooth/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (KernSmooth)
* installing *source* package 'foreign' ...
** package 'foreign' successfully unpacked and MD5 sums checked
** libs
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c R_systat.c -o R_systat.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c Rdbfread.c -o Rdbfread.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c Rdbfwrite.c -o Rdbfwrite.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c SASxport.c -o SASxport.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c avl.c -o avl.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c dbfopen.c -o dbfopen.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c file-handle.c -o file-handle.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c format.c -o format.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c minitab.c -o minitab.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c pfm-read.c -o pfm-read.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c sfm-read.c -o sfm-read.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c spss.c -o spss.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c stataread.c -o stataread.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -L/usr/local/lib -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.5-branch/library/foreign/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (foreign)
* installing *source* package 'rpart' ...
** package 'rpart' successfully unpacked and MD5 sums checked
** libs
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c anova.c -o anova.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c anovapred.c -o anovapred.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c branch.c -o branch.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c bsplit.c -o bsplit.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c choose_surg.c -o choose_surg.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c fix_cp.c -o fix_cp.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c free_tree.c -o free_tree.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c gini.c -o gini.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c graycode.c -o graycode.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c insert_split.c -o insert_split.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c make_cp_list.c -o make_cp_list.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c make_cp_table.c -o make_cp_table.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c mysort.c -o mysort.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c nodesplit.c -o nodesplit.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c partition.c -o partition.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c poisson.c -o poisson.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c pred_rpart.c -o pred_rpart.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c print_tree.c -o print_tree.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c rpart.c -o rpart.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c rpart_callback.c -o rpart_callback.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c rpartexp.c -o rpartexp.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c rpartexp2.c -o rpartexp2.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c rpcountup.c -o rpcountup.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c rpmatrix.c -o rpmatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c rundown.c -o rundown.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c rundown2.c -o rundown2.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c surrogate.c -o surrogate.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c usersplit.c -o usersplit.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c xpred.c -o xpred.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c xval.c -o xval.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -L/usr/local/lib -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.5-branch/library/rpart/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (rpart)
* installing *source* package 'MASS' ...
** package 'MASS' successfully unpacked and MD5 sums checked
** libs
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c MASS.c -o MASS.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c lqs.c -o lqs.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -L/usr/local/lib -o MASS.so MASS.o lqs.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.5-branch/library/MASS/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (MASS)
begin installing recommended package class
begin installing recommended package cluster
* installing *source* package 'lattice' ...
** package 'lattice' successfully unpacked and MD5 sums checked
** libs
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c threeDplot.c -o threeDplot.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -L/usr/local/lib -o lattice.so init.o threeDplot.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.5-branch/library/lattice/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (lattice)
begin installing recommended package Matrix
begin installing recommended package nlme
* installing *source* package 'class' ...
** package 'class' successfully unpacked and MD5 sums checked
** libs
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c class.c -o class.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -L/usr/local/lib -o class.so class.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.5-branch/library/class/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (class)
* installing *source* package 'cluster' ...
** package 'cluster' successfully unpacked and MD5 sums checked
** libs
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c clara.c -o clara.o
gfortran   -fPIC  -g -O2  -c daisy.f -o daisy.o
gfortran   -fPIC  -g -O2  -c dysta.f -o dysta.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c fanny.c -o fanny.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c mona.c -o mona.o
mona.c:249:21: warning: variable 'lcc' is used uninitialized whenever 'for' loop exits because its condition is false [-Wsometimes-uninitialized]
                for (int lbb = k; lbb <= kb; ++lbb) {
                                  ^~~~~~~~~
mona.c:257:28: note: uninitialized use occurs here
                for (int laa = k; laa <= lcc; ++laa) {
                                         ^~~
mona.c:249:21: note: remove the condition if it is always true
                for (int lbb = k; lbb <= kb; ++lbb) {
                                  ^~~~~~~~~
mona.c:248:10: note: initialize the variable 'lcc' to silence this warning
                int lcc, nelbb;
                       ^
                        = 0
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c pam.c -o pam.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c sildist.c -o sildist.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c spannel.c -o spannel.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c twins.c -o twins.o
1 warning generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -L/usr/local/lib -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.5-branch/library/cluster/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (cluster)
* installing *source* package 'nlme' ...
** package 'nlme' successfully unpacked and MD5 sums checked
** libs
gfortran   -fPIC  -g -O2  -c chol.f -o chol.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c corStruct.c -o corStruct.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c gnls.c -o gnls.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c matrix.c -o matrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c nlOptimizer.c -o nlOptimizer.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c nlme.c -o nlme.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c nlmefit.c -o nlmefit.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c pdMat.c -o pdMat.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c pythag.c -o pythag.o
gfortran   -fPIC  -g -O2  -c rs.f -o rs.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -L/usr/local/lib -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o pythag.o rs.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.5-branch/library/nlme/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (nlme)
* installing *source* package 'Matrix' ...
** package 'Matrix' successfully unpacked and MD5 sums checked
** libs
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c CHMfactor.c -o CHMfactor.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c Csparse.c -o Csparse.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c TMatrix_as.c -o TMatrix_as.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c Tsparse.c -o Tsparse.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c Mutils.c -o Mutils.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c chm_common.c -o chm_common.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c cs.c -o cs.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c cs_utils.c -o cs_utils.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c dense.c -o dense.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c dgCMatrix.c -o dgCMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c dgTMatrix.c -o dgTMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c dgeMatrix.c -o dgeMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c dpoMatrix.c -o dpoMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c dppMatrix.c -o dppMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c dsCMatrix.c -o dsCMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c dsyMatrix.c -o dsyMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c dspMatrix.c -o dspMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c dtCMatrix.c -o dtCMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c dtTMatrix.c -o dtTMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c dtrMatrix.c -o dtrMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c dtpMatrix.c -o dtpMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c factorizations.c -o factorizations.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ldense.c -o ldense.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c lgCMatrix.c -o lgCMatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c sparseQR.c -o sparseQR.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c abIndex.c -o abIndex.o
( cd Lib ; /Applications/Xcode.app/Contents/Developer/usr/bin/make clean )
( cd Source ; /Applications/Xcode.app/Contents/Developer/usr/bin/make clean )
( cd Source ; /Applications/Xcode.app/Contents/Developer/usr/bin/make clean )
( cd Lib ; /Applications/Xcode.app/Contents/Developer/usr/bin/make -f "/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/etc/Makeconf" -f Makefile )
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_aat.c -o cholmod_aat.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_add.c -o cholmod_add.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_band.c -o cholmod_band.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_common.c -o cholmod_common.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_complex.c -o cholmod_complex.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_copy.c -o cholmod_copy.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_dense.c -o cholmod_dense.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_error.c -o cholmod_error.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_factor.c -o cholmod_factor.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_memory.c -o cholmod_memory.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_sparse.c -o cholmod_sparse.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_transpose.c -o cholmod_transpose.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_triplet.c -o cholmod_triplet.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Core/cholmod_version.c -o cholmod_version.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Check/cholmod_check.c -o cholmod_check.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Check/cholmod_read.c -o cholmod_read.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Check/cholmod_write.c -o cholmod_write.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Modify/cholmod_updown.c -o cholmod_updown.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_aat.c -o cholmod_l_aat.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_add.c -o cholmod_l_add.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_band.c -o cholmod_l_band.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_common.c -o cholmod_l_common.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_complex.c -o cholmod_l_complex.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_copy.c -o cholmod_l_copy.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_dense.c -o cholmod_l_dense.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_error.c -o cholmod_l_error.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_factor.c -o cholmod_l_factor.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_memory.c -o cholmod_l_memory.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_sparse.c -o cholmod_l_sparse.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_transpose.c -o cholmod_l_transpose.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_triplet.c -o cholmod_l_triplet.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Core/cholmod_version.c -o cholmod_l_version.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Check/cholmod_check.c -o cholmod_l_check.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Check/cholmod_read.c -o cholmod_l_read.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Check/cholmod_write.c -o cholmod_l_write.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Modify/cholmod_updown.c -o cholmod_l_updown.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -DDLONG -c  ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o
ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o  cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o 
( cd Source ; /Applications/Xcode.app/Contents/Developer/usr/bin/make -f "/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/etc/Makeconf" -f Makefile lib )
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c colamd_global.c -o colamd_global.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c colamd.c -o colamd.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c colamd.c -o colamd_l.o
ar -rucs ../../COLAMD.a colamd_global.o colamd.o colamd_l.o
( cd Source ; /Applications/Xcode.app/Contents/Developer/usr/bin/make -f "/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/etc/Makeconf" -f Makefile lib )
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_1.c -o amd_i_1.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_1.c -o amd_l_1.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_2.c -o amd_i_2.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_2.c -o amd_l_2.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_order.c -o amd_i_order.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_order.c -o amd_l_order.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_control.c -o amd_i_control.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_control.c -o amd_l_control.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_info.c -o amd_i_info.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_info.c -o amd_l_info.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDINT -c amd_global.c -o amd_i_global.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -I../Include -DDLONG -c amd_global.c -o amd_l_global.o
ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o amd_i_global.o amd_l_global.o 
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: ../../AMD.a(amd_i_dump.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: ../../AMD.a(amd_l_dump.o) has no symbols
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG -DNTIMER  -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c SuiteSparse_config.c -o SuiteSparse_config.o
ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -L/usr/local/lib -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -lRlapack -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.5-branch/library/Matrix/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'chol2inv' from 'base' in package 'Matrix'
    (from the saved implicit definition)
Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix'
Creating a generic function for 'diag' from package 'base' in package 'Matrix'
Creating a generic function for 'drop' from package 'base' in package 'Matrix'
Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix'
Creating a generic function for 'unname' from package 'base' in package 'Matrix'
Creating a generic function for 'norm' from package 'base' in package 'Matrix'
Creating a generic function for 'rcond' from 'base' in package 'Matrix'
    (from the saved implicit definition)
Creating a generic function for 'rcond' from package 'base' in package 'Matrix'
in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"dsparseMatrix","matrix.csr"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"CsparseMatrix","matrix.csr"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"CsparseMatrix","matrix.coo"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"CsparseMatrix","matrix.csc"': no definition for class "matrix.csc"
in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr"
in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo"
in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc"
Creating a generic function for 'colSums' from package 'base' in package 'Matrix'
Creating a generic function for 'colMeans' from package 'base' in package 'Matrix'
Creating a generic function for 'rowSums' from package 'base' in package 'Matrix'
Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix'
in method for 'colSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
in method for 'rowSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
in method for 'colMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
in method for 'rowMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix'
Creating a generic function for 'diag<-' from package 'base' in package 'Matrix'
Creating a generic function for 'crossprod' from package 'base' in package 'Matrix'
Creating a generic function for 'tcrossprod' from package 'base' in package 'Matrix'
Creating a generic function for 'which' from package 'base' in package 'Matrix'
in method for 'coerce' with signature '"graphAM","sparseMatrix"': no definition for class "graphAM"
in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph"
in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph"
in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL"
in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL"
in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph"
in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL"
in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL"
Creating a generic function for 'qr.R' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix'
Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix'
Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix'
** help
*** installing help indices
** building package indices
Loading required package: Matrix
** installing vignettes
** testing if installed package can be loaded
* DONE (Matrix)
begin installing recommended package survival
begin installing recommended package mgcv
* installing *source* package 'survival' ...
** package 'survival' successfully unpacked and MD5 sums checked
** libs
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c agexact.c -o agexact.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c agfit4.c -o agfit4.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c agfit5.c -o agfit5.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c agmart.c -o agmart.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c agmart2.c -o agmart2.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c agmart3.c -o agmart3.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c agscore.c -o agscore.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c agsurv3.c -o agsurv3.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c agsurv4.c -o agsurv4.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c agsurv5.c -o agsurv5.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c chinv2.c -o chinv2.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c chinv3.c -o chinv3.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c cholesky2.c -o cholesky2.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c cholesky3.c -o cholesky3.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c cholesky5.c -o cholesky5.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c chsolve2.c -o chsolve2.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c chsolve3.c -o chsolve3.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c chsolve5.c -o chsolve5.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c concordance1.c -o concordance1.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c concordance3.c -o concordance3.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c cox_Rcallback.c -o cox_Rcallback.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxcount1.c -o coxcount1.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxdetail.c -o coxdetail.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxexact.c -o coxexact.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxfit5.c -o coxfit5.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxfit6.c -o coxfit6.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxmart.c -o coxmart.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxmart2.c -o coxmart2.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxph_wtest.c -o coxph_wtest.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxsafe.c -o coxsafe.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxscho.c -o coxscho.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c coxscore.c -o coxscore.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c dmatrix.c -o dmatrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c doloop.c -o doloop.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c finegray.c -o finegray.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c gchol.c -o gchol.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c norisk.c -o norisk.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c pyears1.c -o pyears1.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c pyears2.c -o pyears2.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c pyears3b.c -o pyears3b.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c pystep.c -o pystep.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c survConcordance.c -o survConcordance.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c survdiff2.c -o survdiff2.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c survfit4.c -o survfit4.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c survfitci.c -o survfitci.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c survpenal.c -o survpenal.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c survreg6.c -o survreg6.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c survreg7.c -o survreg7.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c survregc1.c -o survregc1.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c survregc2.c -o survregc2.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c survsplit.c -o survsplit.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c tmerge.c -o tmerge.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -L/usr/local/lib -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart2.o agmart3.o agscore.o agsurv3.o agsurv4.o agsurv5.o chinv2.o chinv3.o cholesky2.o cholesky3.o cholesky5.o chsolve2.o chsolve3.o chsolve5.o concordance1.o concordance3.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore.o dmatrix.o doloop.o finegray.o gchol.o init.o norisk.o pyears1.o pyears2.o pyears3b.o pystep.o survConcordance.o survdiff2.o survfit4.o survfitci.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.5-branch/library/survival/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (survival)
begin installing recommended package boot
* installing *source* package 'boot' ...
** package 'boot' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (boot)
* installing *source* package 'mgcv' ...
** package 'mgcv' successfully unpacked and MD5 sums checked
** libs
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c coxph.c -o coxph.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c discrete.c -o discrete.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c gdi.c -o gdi.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c magic.c -o magic.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c mat.c -o mat.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c matrix.c -o matrix.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c mgcv.c -o mgcv.o
mat.c:1744:9: warning: unused variable 'j' [-Wunused-variable]
  int i,j,n1;
        ^
mat.c:1867:9: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
    if (fabs(z0>=1)) { /* downdate not +ve def */
        ^
mat.c:1867:9: note: use function 'abs' instead
    if (fabs(z0>=1)) { /* downdate not +ve def */
        ^~~~
        abs
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c misc.c -o misc.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c mvn.c -o mvn.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c qp.c -o qp.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c soap.c -o soap.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c sparse-smooth.c -o sparse-smooth.o
clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c tprs.c -o tprs.o
2 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -L/usr/local/lib -o mgcv.so coxph.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o tprs.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -lRlapack -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -fopenmp -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.5-branch/lib -lR -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.5-branch/library/mgcv/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (mgcv)
building/updating vignettes for package 'grid' ...

processing 'displaylist.Rnw'
processing 'frame.Rnw'
processing 'grid.Rnw'
processing 'grobs.Rnw'
processing 'interactive.Rnw'
processing 'locndimn.Rnw'
processing 'moveline.Rnw'
processing 'nonfinite.Rnw'
processing 'plotexample.Rnw'
processing 'rotated.Rnw'
processing 'saveload.Rnw'
processing 'sharing.Rnw'
processing 'viewports.Rnw'
building/updating vignettes for package 'parallel' ...

processing 'parallel.Rnw'
building/updating vignettes for package 'utils' ...

processing 'Sweave.Rnw'

[[system return code 0x0]]