R-3.6-branch, el-capitan, x86_64

check   conf   build   
check - 2021-06-08 21:14:04.000000000 -0500

Testing examples for package 'base' Testing examples for package 'tools' comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK Testing examples for package 'utils' Testing examples for package 'grDevices' comparing 'grDevices-Ex.Rout' to 'grDevices-Ex.Rout.save' ... OK Testing examples for package 'graphics' comparing 'graphics-Ex.Rout' to 'graphics-Ex.Rout.save' ... OK Testing examples for package 'stats' comparing 'stats-Ex.Rout' to 'stats-Ex.Rout.save' ... OK Testing examples for package 'datasets' comparing 'datasets-Ex.Rout' to 'datasets-Ex.Rout.save' ... OK Testing examples for package 'methods' Testing examples for package 'grid' comparing 'grid-Ex.Rout' to 'grid-Ex.Rout.save' ... OK Testing examples for package 'splines' comparing 'splines-Ex.Rout' to 'splines-Ex.Rout.save' ... OK Testing examples for package 'stats4' comparing 'stats4-Ex.Rout' to 'stats4-Ex.Rout.save' ... OK Testing examples for package 'tcltk' Testing examples for package 'compiler' Testing examples for package 'parallel' running strict specific tests running code in '../../../R-3.6-branch/tests/eval-etc.R' ... OK comparing 'eval-etc.Rout' to '../../../R-3.6-branch/tests/eval-etc.Rout.save' ... OK running code in '../../../R-3.6-branch/tests/simple-true.R' ... OK comparing 'simple-true.Rout' to '../../../R-3.6-branch/tests/simple-true.Rout.save' ... OK running code in '../../../R-3.6-branch/tests/arith-true.R' ... OK comparing 'arith-true.Rout' to '../../../R-3.6-branch/tests/arith-true.Rout.save' ... OK running code in '../../../R-3.6-branch/tests/arith.R' ... OK comparing 'arith.Rout' to '../../../R-3.6-branch/tests/arith.Rout.save' ... OK running code in '../../../R-3.6-branch/tests/lm-tests.R' ... OK comparing 'lm-tests.Rout' to '../../../R-3.6-branch/tests/lm-tests.Rout.save' ... OK running code in '../../../R-3.6-branch/tests/ok-errors.R' ... OK comparing 'ok-errors.Rout' to '../../../R-3.6-branch/tests/ok-errors.Rout.save' ... OK running code in '../../../R-3.6-branch/tests/method-dispatch.R' ... OK comparing 'method-dispatch.Rout' to '../../../R-3.6-branch/tests/method-dispatch.Rout.save' ... OK running code in '../../../R-3.6-branch/tests/any-all.R' ... OK comparing 'any-all.Rout' to '../../../R-3.6-branch/tests/any-all.Rout.save' ... OK running code in '../../../R-3.6-branch/tests/d-p-q-r-tests.R' ... OK comparing 'd-p-q-r-tests.Rout' to '../../../R-3.6-branch/tests/d-p-q-r-tests.Rout.save' ... OK running sloppy specific tests running code in '../../../R-3.6-branch/tests/complex.R' ... OK comparing 'complex.Rout' to '../../../R-3.6-branch/tests/complex.Rout.save' ... OK running code in '../../../R-3.6-branch/tests/eval-etc-2.R' ... OK comparing 'eval-etc-2.Rout' to '../../../R-3.6-branch/tests/eval-etc-2.Rout.save' ... OK running code in '../../../R-3.6-branch/tests/print-tests.R' ... OK comparing 'print-tests.Rout' to '../../../R-3.6-branch/tests/print-tests.Rout.save' ... OK running code in '../../../R-3.6-branch/tests/lapack.R' ... OK comparing 'lapack.Rout' to '../../../R-3.6-branch/tests/lapack.Rout.save' ... OK running code in '../../../R-3.6-branch/tests/datasets.R' ... OK comparing 'datasets.Rout' to '../../../R-3.6-branch/tests/datasets.Rout.save' ... OK running code in '../../../R-3.6-branch/tests/datetime.R' ... OK comparing 'datetime.Rout' to '../../../R-3.6-branch/tests/datetime.Rout.save' ... OK running code in '../../../R-3.6-branch/tests/iec60559.R' ... OK comparing 'iec60559.Rout' to '../../../R-3.6-branch/tests/iec60559.Rout.save' ... OK checking Sys.timezone ... running code in '../../../R-3.6-branch/tests/timezone.R' ... OK running regression tests ... running code in '../../../R-3.6-branch/tests/array-subset.R' ... OK running code in '../../../R-3.6-branch/tests/reg-tests-1a.R' ... OK running code in '../../../R-3.6-branch/tests/reg-tests-1b.R' ... OK running code in '../../../R-3.6-branch/tests/reg-tests-1c.R' ... OK running code in '../../../R-3.6-branch/tests/reg-tests-1d.R' ... OK running code in '../../../R-3.6-branch/tests/reg-tests-2.R' ... OK comparing 'reg-tests-2.Rout' to '../../../R-3.6-branch/tests/reg-tests-2.Rout.save' ... OK running code in '../../../R-3.6-branch/tests/reg-examples1.R' ... OK running code in '../../../R-3.6-branch/tests/reg-examples2.R' ... OK running code in '../../../R-3.6-branch/tests/reg-packages.R' ... OK running code in '../../../R-3.6-branch/tests/p-qbeta-strict-tst.R' ... OK running code in '../../../R-3.6-branch/tests/r-strict-tst.R' ... OK running code in '../../../R-3.6-branch/tests/reg-IO.R' ... OK comparing 'reg-IO.Rout' to '../../../R-3.6-branch/tests/reg-IO.Rout.save' ... OK running code in '../../../R-3.6-branch/tests/reg-IO2.R' ... OK comparing 'reg-IO2.Rout' to '../../../R-3.6-branch/tests/reg-IO2.Rout.save' ... OK running code in '../../../R-3.6-branch/tests/reg-plot.R' ... OK comparing 'reg-plot.pdf' to '../../../R-3.6-branch/tests/reg-plot.pdf.save' ... OK running code in '../../../R-3.6-branch/tests/reg-S4-examples.R' ... OK running code in '../../../R-3.6-branch/tests/reg-BLAS.R' ... OK running code in '../../../R-3.6-branch/tests/reg-tests-3.R' ... OK comparing 'reg-tests-3.Rout' to '../../../R-3.6-branch/tests/reg-tests-3.Rout.save' ... OK running code in '../../../R-3.6-branch/tests/reg-examples3.R' ... OK comparing 'reg-examples3.Rout' to '../../../R-3.6-branch/tests/reg-examples3.Rout.save' ... OK running tests of plotting Latin-1 expect failure or some differences if not in a Latin-1 or UTF-8 locale running code in '../../../R-3.6-branch/tests/reg-plot-latin1.R' ... FAILED running code in '../../../R-3.6-branch/tests/reg-S4.R' ... OK comparing 'reg-S4.Rout' to '../../../R-3.6-branch/tests/reg-S4.Rout.save' ... OK running tests of Internet functions running code in '../../../R-3.6-branch/tests/internet.R' ... OK comparing 'internet.Rout' to '../../../R-3.6-branch/tests/internet.Rout.save' ... OK [[system return code 0x0]]
conf - 2021-06-08 21:01:43.000000000 -0500
checking build system type... x86_64-apple-darwin15.6.0
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(cached) yes checking whether included gettext is requested... no checking for GNU gettext in libc... no checking for GNU gettext in libintl... no checking whether to use NLS... yes checking where the gettext function comes from... included intl directory Finished configuring src/extra/intl directory checking whether OpenMP SIMD reduction is supported... yes using as R_SHELL for scripts ... /bin/sh configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile 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creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands R is now configured for x86_64-apple-darwin15.6.0 Source directory: ../../R-3.6-branch Installation directory: /Library/Frameworks C compiler: clang -Wall -g -O2 Fortran fixed-form compiler: gfortran -Wall -g -O2 Default C++ compiler: clang++ -std=gnu++11 -Wall -g -O2 C++98 compiler: clang++ -std=gnu++98 -Wall -g -O2 C++11 compiler: clang++ -std=gnu++11 -Wall -g -O2 C++14 compiler: clang++ -std=gnu++14 -Wall -g -O2 C++17 compiler: clang++ -std=gnu++17 -Wall -g -O2 Fortran free-form compiler: gfortran -Wall -g -O2 Obj-C compiler: clang -Wall -g -O2 -fobjc-exceptions Interfaces supported: X11, aqua, tcltk External libraries: readline, curl Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: framework, shared BLAS, R profiling, memory profiling Capabilities skipped: Options not enabled: Recommended packages: yes [[system return code 0x0]]
build - 2021-06-08 21:10:02.000000000 -0500
creating RESOURCES
creating FAQ
creating doc/html/resources.html
make[1]: Nothing to be done for `R'.
make[1]: Nothing to be done for `R'.
make[2]: Nothing to be done for `R'.
mkdir ../share/R
mkdir ../share/dictionaries
mkdir ../share/encodings
mkdir ../share/java
mkdir ../share/licenses
mkdir ../share/make
mkdir ../share/Rd
mkdir ../share/Rd/macros
mkdir ../share/sh
mkdir ../share/texmf
mkdir ../share/texmf/bibtex
mkdir ../share/texmf/bibtex/bib
mkdir ../share/texmf/bibtex/bst
mkdir ../share/texmf/tex
mkdir ../share/texmf/tex/latex
creating src/scripts/R.fe
mkdir ../../bin
mkdir ../../include
mkdir ../../../include/R_ext
gfortran  -fPIC  -Wall -g -O2  -c ../../../../../R-3.6-branch/src/extra/blas/blas.f -o blas.o
making localtime.d from ../../../../../R-3.6-branch/src/extra/tzone/localtime.c
making strftime.d from ../../../../../R-3.6-branch/src/extra/tzone/strftime.c
making regcomp.d from ../../../../../R-3.6-branch/src/extra/tre/regcomp.c
making regerror.d from ../../../../../R-3.6-branch/src/extra/tre/regerror.c
making regexec.d from ../../../../../R-3.6-branch/src/extra/tre/regexec.c
gfortran  -fPIC  -Wall -g -O2  -c ../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f -o cmplxblas.o
making bindtextdom.d from ../../../../../R-3.6-branch/src/extra/intl/bindtextdom.c
making tre-ast.d from ../../../../../R-3.6-branch/src/extra/tre/tre-ast.c
making tre-compile.d from ../../../../../R-3.6-branch/src/extra/tre/tre-compile.c
making tre-match-approx.d from ../../../../../R-3.6-branch/src/extra/tre/tre-match-approx.c
making dcgettext.d from ../../../../../R-3.6-branch/src/extra/intl/dcgettext.c
clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/tzone -I../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H  -I/System/Library/Frameworks/CoreFoundation.framework/Headers  -fPIC  -Wall -g -O2   -c ../../../../../R-3.6-branch/src/extra/tzone/localtime.c -o localtime.o
making dgettext.d from ../../../../../R-3.6-branch/src/extra/intl/dgettext.c
making gettext.d from ../../../../../R-3.6-branch/src/extra/intl/gettext.c
making tre-match-backtrack.d from ../../../../../R-3.6-branch/src/extra/tre/tre-match-backtrack.c
making tre-match-parallel.d from ../../../../../R-3.6-branch/src/extra/tre/tre-match-parallel.c
making tre-mem.d from ../../../../../R-3.6-branch/src/extra/tre/tre-mem.c
making finddomain.d from ../../../../../R-3.6-branch/src/extra/intl/finddomain.c
making loadmsgcat.d from ../../../../../R-3.6-branch/src/extra/intl/loadmsgcat.c

../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:4796:26: RTEMP = RTEMP + DCONJG( A( L, J ) )*A( L, J ) 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:4808:26: RTEMP = RTEMP + DCONJG( A( L, J ) )*A( L, J ) 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] making tre-parse.d from ../../../../../R-3.6-branch/src/extra/tre/tre-parse.c making tre-stack.d from ../../../../../R-3.6-branch/src/extra/tre/tre-stack.c making xmalloc.d from ../../../../../R-3.6-branch/src/extra/tre/xmalloc.c making textdomain.d from ../../../../../R-3.6-branch/src/extra/intl/textdomain.c making l10nflist.d from ../../../../../R-3.6-branch/src/extra/intl/l10nflist.c clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/tzone -I../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/tzone/strftime.c -o strftime.o making explodename.d from ../../../../../R-3.6-branch/src/extra/intl/explodename.c making dcigettext.d from ../../../../../R-3.6-branch/src/extra/intl/dcigettext.c clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/tre/regcomp.c -o regcomp.o making dcngettext.d from ../../../../../R-3.6-branch/src/extra/intl/dcngettext.c making dngettext.d from ../../../../../R-3.6-branch/src/extra/intl/dngettext.c making ngettext.d from ../../../../../R-3.6-branch/src/extra/intl/ngettext.c making plural.d from ../../../../../R-3.6-branch/src/extra/intl/plural.c making plural-exp.d from ../../../../../R-3.6-branch/src/extra/intl/plural-exp.c making langprefs.d from ../../../../../R-3.6-branch/src/extra/intl/langprefs.c making localcharset.d from ../../../../../R-3.6-branch/src/extra/intl/localcharset.c clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/tre/regerror.c -o regerror.o making localename.d from ../../../../../R-3.6-branch/src/extra/intl/localename.c making printf.d from ../../../../../R-3.6-branch/src/extra/intl/printf.c making osdep.d from ../../../../../R-3.6-branch/src/extra/intl/osdep.c making intl-compat.d from ../../../../../R-3.6-branch/src/extra/intl/intl-compat.c clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/tre/regexec.c -o regexec.o clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/tre/tre-ast.c -o tre-ast.o making hash-string.d from ../../../../../R-3.6-branch/src/extra/intl/hash-string.c making lock.d from ../../../../../R-3.6-branch/src/extra/intl/lock.c clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/tre/tre-compile.c -o tre-compile.o clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/tre/tre-match-approx.c -o tre-match-approx.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/bindtextdom.c -o bindtextdom.o clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/tre/tre-match-backtrack.c -o tre-match-backtrack.o clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/tre/tre-match-parallel.c -o tre-match-parallel.o ar -cr libtz.a localtime.o strftime.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/dcgettext.c -o dcgettext.o clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/tre/tre-mem.c -o tre-mem.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/dgettext.c -o dgettext.o clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/tre/tre-parse.c -o tre-parse.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/gettext.c -o gettext.o
../../../../../R-3.6-branch/src/extra/blas/blas.f:1614:0: DH22=DH22*GAM Warning: 'dh22' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/extra/blas/blas.f:1613:0: DH21=DH21*GAM Warning: 'dh21' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/extra/blas/blas.f:1591:0: DH12=DH12*GAM Warning: 'dh12' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/extra/blas/blas.f:1590:0: DH11=DH11*GAM Warning: 'dh11' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:1130:0: INTEGER I, INFO, IX, IY, J, JX, JY, KX, KY Warning: 'ky' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:1130:0: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:1130:0: Warning: 'jy' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:1130:0: Warning: 'jx' may be used uninitialized in this function [-Wmaybe-uninitialized] clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/finddomain.c -o finddomain.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/loadmsgcat.c -o loadmsgcat.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/textdomain.c -o textdomain.o
../../../../../R-3.6-branch/src/extra/blas/blas.f:2409:0: INTEGER I, INFO, IX, J, JX, K, KK, KX Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/l10nflist.c -o l10nflist.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/explodename.c -o explodename.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/dcigettext.c -o dcigettext.o clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/tre/tre-stack.c -o tre-stack.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/dcngettext.c -o dcngettext.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/dngettext.c -o dngettext.o clang -I../../../../../R-3.6-branch/src/extra/tre -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/tre/xmalloc.c -o xmalloc.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/ngettext.c -o ngettext.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/plural.c -o plural.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/plural-exp.c -o plural-exp.o
../../../../../R-3.6-branch/src/extra/blas/blas.f:3451:0: INTEGER I, INFO, IX, J, JX, KX Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/langprefs.c -o langprefs.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/localcharset.c -o localcharset.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/localename.c -o localename.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/printf.c -o printf.o ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o
../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:2208:0: INTEGER I, INFO, IX, J, JX, KX Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] ranlib libtre.a clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/osdep.c -o osdep.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/intl-compat.c -o intl-compat.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/hash-string.c -o hash-string.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I../../../../../R-3.6-branch/src/extra/intl -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DLOCALEDIR=\"\" -DLOCALEALIAS_PATH=\"\" -DIN_LIBINTL -DHAVE_CONFIG_H -I/System/Library/Frameworks/CoreFoundation.framework/Headers -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/extra/intl/lock.c -o lock.o ar -cr libintl.a bindtextdom.o dcgettext.o dgettext.o gettext.o finddomain.o loadmsgcat.o textdomain.o l10nflist.o explodename.o dcigettext.o dcngettext.o dngettext.o ngettext.o plural.o plural-exp.o langprefs.o localcharset.o localename.o printf.o osdep.o intl-compat.o hash-string.o lock.o
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(printf.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(osdep.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(lock.o) has no symbols ranlib libintl.a
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(printf.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(osdep.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libintl.a(lock.o) has no symbols ../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:2946:0: INTEGER I, INFO, IX, J, JX, KX Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:4386:0: INTEGER I, INFO, IX, J, JX, KX Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:5195:0: INTEGER I, INFO, IX, J, JX, K, KK, KX Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:5423:0: INTEGER I, INFO, IX, IY, J, JX, JY, K, KK, KX, KY Warning: 'ky' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:5423:0: Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:5423:0: Warning: 'jy' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:5423:0: Warning: 'jx' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:6649:0: INTEGER I, INFO, IX, J, JX, KPLUS1, KX, L Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:7030:0: INTEGER I, INFO, IX, J, JX, KPLUS1, KX, L Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:7367:0: INTEGER I, INFO, IX, J, JX, K, KK, KX Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/extra/blas/cmplxblas.f:7708:0: INTEGER I, INFO, IX, J, JX, K, KK, KX Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -fopenmp -L/usr/local/lib -o libRblas.dylib blas.o cmplxblas.o -install_name libRblas.dylib -headerpad_max_install_names -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm mkdir /Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib making integrate.d from ../../../../R-3.6-branch/src/appl/integrate.c making interv.d from ../../../../R-3.6-branch/src/appl/interv.c making maxcol.d from ../../../../R-3.6-branch/src/appl/maxcol.c making optim.d from ../../../../R-3.6-branch/src/appl/optim.c making pretty.d from ../../../../R-3.6-branch/src/appl/pretty.c making uncmin.d from ../../../../R-3.6-branch/src/appl/uncmin.c clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/appl/integrate.c -o integrate.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/appl/interv.c -o interv.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/appl/maxcol.c -o maxcol.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/appl/optim.c -o optim.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/appl/pretty.c -o pretty.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/appl/uncmin.c -o uncmin.o gfortran -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/appl/dchdc.f -o dchdc.o gfortran -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/appl/dpbfa.f -o dpbfa.o gfortran -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/appl/dpbsl.f -o dpbsl.o gfortran -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/appl/dpoco.f -o dpoco.o gfortran -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/appl/dpodi.f -o dpodi.o gfortran -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/appl/dpofa.f -o dpofa.o gfortran -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/appl/dposl.f -o dposl.o gfortran -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/appl/dqrdc.f -o dqrdc.o gfortran -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/appl/dqrdc2.f -o dqrdc2.o gfortran -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/appl/dqrls.f -o dqrls.o gfortran -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/appl/dqrsl.f -o dqrsl.o gfortran -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/appl/dqrutl.f -o dqrutl.o gfortran -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/appl/dsvdc.f -o dsvdc.o gfortran -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/appl/dtrco.f -o dtrco.o gfortran -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/appl/dtrsl.f -o dtrsl.o ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o ranlib libappl.a making mlutils.d from ../../../../R-3.6-branch/src/nmath/mlutils.c making d1mach.d from ../../../../R-3.6-branch/src/nmath/d1mach.c making fmin2.d from ../../../../R-3.6-branch/src/nmath/fmin2.c making i1mach.d from ../../../../R-3.6-branch/src/nmath/i1mach.c making fmax2.d from ../../../../R-3.6-branch/src/nmath/fmax2.c making fround.d from ../../../../R-3.6-branch/src/nmath/fround.c making fprec.d from ../../../../R-3.6-branch/src/nmath/fprec.c making ftrunc.d from ../../../../R-3.6-branch/src/nmath/ftrunc.c making sign.d from ../../../../R-3.6-branch/src/nmath/sign.c making imax2.d from ../../../../R-3.6-branch/src/nmath/imax2.c making fsign.d from ../../../../R-3.6-branch/src/nmath/fsign.c making chebyshev.d from ../../../../R-3.6-branch/src/nmath/chebyshev.c making imin2.d from ../../../../R-3.6-branch/src/nmath/imin2.c making log1p.d from ../../../../R-3.6-branch/src/nmath/log1p.c making lgammacor.d from ../../../../R-3.6-branch/src/nmath/lgammacor.c making gammalims.d from ../../../../R-3.6-branch/src/nmath/gammalims.c making stirlerr.d from ../../../../R-3.6-branch/src/nmath/stirlerr.c making bd0.d from ../../../../R-3.6-branch/src/nmath/bd0.c making gamma.d from ../../../../R-3.6-branch/src/nmath/gamma.c making gamma_cody.d from ../../../../R-3.6-branch/src/nmath/gamma_cody.c making lgamma.d from ../../../../R-3.6-branch/src/nmath/lgamma.c making lbeta.d from ../../../../R-3.6-branch/src/nmath/lbeta.c making beta.d from ../../../../R-3.6-branch/src/nmath/beta.c making polygamma.d from ../../../../R-3.6-branch/src/nmath/polygamma.c making cospi.d from ../../../../R-3.6-branch/src/nmath/cospi.c making bessel_i.d from ../../../../R-3.6-branch/src/nmath/bessel_i.c making bessel_k.d from ../../../../R-3.6-branch/src/nmath/bessel_k.c making bessel_j.d from ../../../../R-3.6-branch/src/nmath/bessel_j.c making choose.d from ../../../../R-3.6-branch/src/nmath/choose.c making bessel_y.d from ../../../../R-3.6-branch/src/nmath/bessel_y.c making snorm.d from ../../../../R-3.6-branch/src/nmath/snorm.c making sexp.d from ../../../../R-3.6-branch/src/nmath/sexp.c making pgamma.d from ../../../../R-3.6-branch/src/nmath/pgamma.c making dgamma.d from ../../../../R-3.6-branch/src/nmath/dgamma.c making qgamma.d from ../../../../R-3.6-branch/src/nmath/qgamma.c making rgamma.d from ../../../../R-3.6-branch/src/nmath/rgamma.c making dbeta.d from ../../../../R-3.6-branch/src/nmath/dbeta.c making qbeta.d from ../../../../R-3.6-branch/src/nmath/qbeta.c making pbeta.d from ../../../../R-3.6-branch/src/nmath/pbeta.c making rbeta.d from ../../../../R-3.6-branch/src/nmath/rbeta.c making dunif.d from ../../../../R-3.6-branch/src/nmath/dunif.c making punif.d from ../../../../R-3.6-branch/src/nmath/punif.c making qunif.d from ../../../../R-3.6-branch/src/nmath/qunif.c making runif.d from ../../../../R-3.6-branch/src/nmath/runif.c making pnorm.d from ../../../../R-3.6-branch/src/nmath/pnorm.c making dnorm.d from ../../../../R-3.6-branch/src/nmath/dnorm.c making qnorm.d from ../../../../R-3.6-branch/src/nmath/qnorm.c making rnorm.d from ../../../../R-3.6-branch/src/nmath/rnorm.c making plnorm.d from ../../../../R-3.6-branch/src/nmath/plnorm.c making dlnorm.d from ../../../../R-3.6-branch/src/nmath/dlnorm.c making qlnorm.d from ../../../../R-3.6-branch/src/nmath/qlnorm.c making rlnorm.d from ../../../../R-3.6-branch/src/nmath/rlnorm.c making pf.d from ../../../../R-3.6-branch/src/nmath/pf.c making df.d from ../../../../R-3.6-branch/src/nmath/df.c making qf.d from ../../../../R-3.6-branch/src/nmath/qf.c making rf.d from ../../../../R-3.6-branch/src/nmath/rf.c making dnf.d from ../../../../R-3.6-branch/src/nmath/dnf.c making dt.d from ../../../../R-3.6-branch/src/nmath/dt.c making pt.d from ../../../../R-3.6-branch/src/nmath/pt.c making qt.d from ../../../../R-3.6-branch/src/nmath/qt.c making rt.d from ../../../../R-3.6-branch/src/nmath/rt.c making dnt.d from ../../../../R-3.6-branch/src/nmath/dnt.c making dchisq.d from ../../../../R-3.6-branch/src/nmath/dchisq.c making pchisq.d from ../../../../R-3.6-branch/src/nmath/pchisq.c making qchisq.d from ../../../../R-3.6-branch/src/nmath/qchisq.c making rchisq.d from ../../../../R-3.6-branch/src/nmath/rchisq.c making rnchisq.d from ../../../../R-3.6-branch/src/nmath/rnchisq.c making dbinom.d from ../../../../R-3.6-branch/src/nmath/dbinom.c making pbinom.d from ../../../../R-3.6-branch/src/nmath/pbinom.c making rbinom.d from ../../../../R-3.6-branch/src/nmath/rbinom.c making qbinom.d from ../../../../R-3.6-branch/src/nmath/qbinom.c making rmultinom.d from ../../../../R-3.6-branch/src/nmath/rmultinom.c making dcauchy.d from ../../../../R-3.6-branch/src/nmath/dcauchy.c making pcauchy.d from ../../../../R-3.6-branch/src/nmath/pcauchy.c making rcauchy.d from ../../../../R-3.6-branch/src/nmath/rcauchy.c making dexp.d from ../../../../R-3.6-branch/src/nmath/dexp.c making qcauchy.d from ../../../../R-3.6-branch/src/nmath/qcauchy.c making pexp.d from ../../../../R-3.6-branch/src/nmath/pexp.c making qexp.d from ../../../../R-3.6-branch/src/nmath/qexp.c making rexp.d from ../../../../R-3.6-branch/src/nmath/rexp.c making dgeom.d from ../../../../R-3.6-branch/src/nmath/dgeom.c making qgeom.d from ../../../../R-3.6-branch/src/nmath/qgeom.c making pgeom.d from ../../../../R-3.6-branch/src/nmath/pgeom.c making rgeom.d from ../../../../R-3.6-branch/src/nmath/rgeom.c making dhyper.d from ../../../../R-3.6-branch/src/nmath/dhyper.c making phyper.d from ../../../../R-3.6-branch/src/nmath/phyper.c making qhyper.d from ../../../../R-3.6-branch/src/nmath/qhyper.c making rhyper.d from ../../../../R-3.6-branch/src/nmath/rhyper.c making dnbinom.d from ../../../../R-3.6-branch/src/nmath/dnbinom.c making pnbinom.d from ../../../../R-3.6-branch/src/nmath/pnbinom.c making dpois.d from ../../../../R-3.6-branch/src/nmath/dpois.c making rnbinom.d from ../../../../R-3.6-branch/src/nmath/rnbinom.c making qnbinom.d from ../../../../R-3.6-branch/src/nmath/qnbinom.c making ppois.d from ../../../../R-3.6-branch/src/nmath/ppois.c making qpois.d from ../../../../R-3.6-branch/src/nmath/qpois.c making rpois.d from ../../../../R-3.6-branch/src/nmath/rpois.c making dweibull.d from ../../../../R-3.6-branch/src/nmath/dweibull.c making pweibull.d from ../../../../R-3.6-branch/src/nmath/pweibull.c making qweibull.d from ../../../../R-3.6-branch/src/nmath/qweibull.c making dlogis.d from ../../../../R-3.6-branch/src/nmath/dlogis.c making rweibull.d from ../../../../R-3.6-branch/src/nmath/rweibull.c making plogis.d from ../../../../R-3.6-branch/src/nmath/plogis.c making qlogis.d from ../../../../R-3.6-branch/src/nmath/qlogis.c making rlogis.d from ../../../../R-3.6-branch/src/nmath/rlogis.c making dnchisq.d from ../../../../R-3.6-branch/src/nmath/dnchisq.c making dnbeta.d from ../../../../R-3.6-branch/src/nmath/dnbeta.c making qnchisq.d from ../../../../R-3.6-branch/src/nmath/qnchisq.c making pnchisq.d from ../../../../R-3.6-branch/src/nmath/pnchisq.c making qnbeta.d from ../../../../R-3.6-branch/src/nmath/qnbeta.c making pnbeta.d from ../../../../R-3.6-branch/src/nmath/pnbeta.c making pnf.d from ../../../../R-3.6-branch/src/nmath/pnf.c making pnt.d from ../../../../R-3.6-branch/src/nmath/pnt.c making qnf.d from ../../../../R-3.6-branch/src/nmath/qnf.c making qnt.d from ../../../../R-3.6-branch/src/nmath/qnt.c making ptukey.d from ../../../../R-3.6-branch/src/nmath/ptukey.c making qtukey.d from ../../../../R-3.6-branch/src/nmath/qtukey.c making toms708.d from ../../../../R-3.6-branch/src/nmath/toms708.c making wilcox.d from ../../../../R-3.6-branch/src/nmath/wilcox.c making signrank.d from ../../../../R-3.6-branch/src/nmath/signrank.c clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/mlutils.c -o mlutils.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/d1mach.c -o d1mach.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/i1mach.c -o i1mach.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/fmax2.c -o fmax2.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/fmin2.c -o fmin2.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/fprec.c -o fprec.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/fround.c -o fround.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/ftrunc.c -o ftrunc.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/sign.c -o sign.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/fsign.c -o fsign.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/imax2.c -o imax2.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/imin2.c -o imin2.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/chebyshev.c -o chebyshev.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/log1p.c -o log1p.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/lgammacor.c -o lgammacor.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/gammalims.c -o gammalims.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/stirlerr.c -o stirlerr.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/bd0.c -o bd0.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/gamma.c -o gamma.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/lgamma.c -o lgamma.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/gamma_cody.c -o gamma_cody.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/beta.c -o beta.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/lbeta.c -o lbeta.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/polygamma.c -o polygamma.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/cospi.c -o cospi.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/bessel_i.c -o bessel_i.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/bessel_j.c -o bessel_j.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/bessel_k.c -o bessel_k.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/bessel_y.c -o bessel_y.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/choose.c -o choose.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/snorm.c -o snorm.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/sexp.c -o sexp.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/dgamma.c -o dgamma.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/pgamma.c -o pgamma.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/qgamma.c -o qgamma.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/rgamma.c -o rgamma.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/dbeta.c -o dbeta.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/pbeta.c -o pbeta.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/qbeta.c -o qbeta.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/rbeta.c -o rbeta.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/dunif.c -o dunif.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/punif.c -o punif.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/qunif.c -o qunif.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/runif.c -o runif.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/dnorm.c -o dnorm.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/pnorm.c -o pnorm.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/qnorm.c -o qnorm.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/rnorm.c -o rnorm.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/dlnorm.c -o dlnorm.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/plnorm.c -o plnorm.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/qlnorm.c -o qlnorm.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/rlnorm.c -o rlnorm.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/df.c -o df.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/pf.c -o pf.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/qf.c -o qf.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/rf.c -o rf.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/dnf.c -o dnf.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/dt.c -o dt.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/pt.c -o pt.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/qt.c -o qt.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/rt.c -o rt.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/dnt.c -o dnt.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/dchisq.c -o dchisq.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/pchisq.c -o pchisq.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/qchisq.c -o qchisq.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/rchisq.c -o rchisq.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/rnchisq.c -o rnchisq.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/dbinom.c -o dbinom.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/pbinom.c -o pbinom.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/qbinom.c -o qbinom.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/rbinom.c -o rbinom.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/rmultinom.c -o rmultinom.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/dcauchy.c -o dcauchy.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/pcauchy.c -o pcauchy.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/qcauchy.c -o qcauchy.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/rcauchy.c -o rcauchy.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/dexp.c -o dexp.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/pexp.c -o pexp.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/qexp.c -o qexp.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/rexp.c -o rexp.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/dgeom.c -o dgeom.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/pgeom.c -o pgeom.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/qgeom.c -o qgeom.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/rgeom.c -o rgeom.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/dhyper.c -o dhyper.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/phyper.c -o phyper.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/qhyper.c -o qhyper.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/rhyper.c -o rhyper.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/dnbinom.c -o dnbinom.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/pnbinom.c -o pnbinom.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/qnbinom.c -o qnbinom.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/rnbinom.c -o rnbinom.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/dpois.c -o dpois.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/ppois.c -o ppois.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/qpois.c -o qpois.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/rpois.c -o rpois.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/dweibull.c -o dweibull.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/pweibull.c -o pweibull.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/qweibull.c -o qweibull.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/rweibull.c -o rweibull.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/dlogis.c -o dlogis.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/plogis.c -o plogis.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/qlogis.c -o qlogis.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/rlogis.c -o rlogis.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/dnchisq.c -o dnchisq.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/pnchisq.c -o pnchisq.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/qnchisq.c -o qnchisq.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/dnbeta.c -o dnbeta.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/pnbeta.c -o pnbeta.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/qnbeta.c -o qnbeta.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/pnf.c -o pnf.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/pnt.c -o pnt.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/qnf.c -o qnf.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/qnt.c -o qnt.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/ptukey.c -o ptukey.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/qtukey.c -o qtukey.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/toms708.c -o toms708.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/wilcox.c -o wilcox.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/nmath/signrank.c -o signrank.o ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(mlutils.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(log1p.o) has no symbols ranlib libnmath.a
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(mlutils.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libnmath.a(log1p.o) has no symbols config.status: creating src/unix/Makefile making Rembedded.d from ../../../../R-3.6-branch/src/unix/Rembedded.c making dynload.d from ../../../../R-3.6-branch/src/unix/dynload.c making system.d from ../../../../R-3.6-branch/src/unix/system.c making sys-unix.d from ../../../../R-3.6-branch/src/unix/sys-unix.c making X11.d from ../../../../R-3.6-branch/src/unix/X11.c making sys-std.d from ../../../../R-3.6-branch/src/unix/sys-std.c clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -I/usr/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/unix/Rembedded.c -o Rembedded.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -I/usr/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/unix/dynload.c -o dynload.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -I/usr/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/unix/system.c -o system.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -I/usr/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/unix/sys-unix.c -o sys-unix.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -I/usr/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/unix/sys-std.c -o sys-std.o clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -I/usr/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/unix/X11.c -o X11.o ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o ranlib libunix.a clang -I. -I../../src/include -I../../../../R-3.6-branch/src/include -I/usr/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -Wall -g -O2 -L/usr/local/lib -DR_HOME='"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch"' \ -o Rscript ../../../../R-3.6-branch/src/unix/Rscript.c config.status: creating src/main/Makefile making CommandLineArgs.d from ../../../../R-3.6-branch/src/main/CommandLineArgs.c making Rdynload.d from ../../../../R-3.6-branch/src/main/Rdynload.c making Renviron.d from ../../../../R-3.6-branch/src/main/Renviron.c making RNG.d from ../../../../R-3.6-branch/src/main/RNG.c making agrep.d from ../../../../R-3.6-branch/src/main/agrep.c making altrep.d from ../../../../R-3.6-branch/src/main/altrep.c making altclasses.d from ../../../../R-3.6-branch/src/main/altclasses.c making apply.d from ../../../../R-3.6-branch/src/main/apply.c making arithmetic.d from ../../../../R-3.6-branch/src/main/arithmetic.c making array.d from ../../../../R-3.6-branch/src/main/array.c making attrib.d from ../../../../R-3.6-branch/src/main/attrib.c making bind.d from ../../../../R-3.6-branch/src/main/bind.c making character.d from ../../../../R-3.6-branch/src/main/character.c making builtin.d from ../../../../R-3.6-branch/src/main/builtin.c making coerce.d from ../../../../R-3.6-branch/src/main/coerce.c making colors.d from ../../../../R-3.6-branch/src/main/colors.c making complex.d from ../../../../R-3.6-branch/src/main/complex.c making connections.d from ../../../../R-3.6-branch/src/main/connections.c making cum.d from ../../../../R-3.6-branch/src/main/cum.c making context.d from ../../../../R-3.6-branch/src/main/context.c making dcf.d from ../../../../R-3.6-branch/src/main/dcf.c making datetime.d from ../../../../R-3.6-branch/src/main/datetime.c making debug.d from ../../../../R-3.6-branch/src/main/debug.c making deparse.d from ../../../../R-3.6-branch/src/main/deparse.c making devices.d from ../../../../R-3.6-branch/src/main/devices.c making dotcode.d from ../../../../R-3.6-branch/src/main/dotcode.c making dounzip.d from ../../../../R-3.6-branch/src/main/dounzip.c making dstruct.d from ../../../../R-3.6-branch/src/main/dstruct.c making duplicate.d from ../../../../R-3.6-branch/src/main/duplicate.c making edit.d from ../../../../R-3.6-branch/src/main/edit.c making engine.d from ../../../../R-3.6-branch/src/main/engine.c making envir.d from ../../../../R-3.6-branch/src/main/envir.c making errors.d from ../../../../R-3.6-branch/src/main/errors.c making eval.d from ../../../../R-3.6-branch/src/main/eval.c making format.d from ../../../../R-3.6-branch/src/main/format.c making gevents.d from ../../../../R-3.6-branch/src/main/gevents.c making gram.d from ../../../../R-3.6-branch/src/main/gram.c making gram-ex.d from ../../../../R-3.6-branch/src/main/gram-ex.c making graphics.d from ../../../../R-3.6-branch/src/main/graphics.c making grep.d from ../../../../R-3.6-branch/src/main/grep.c making identical.d from ../../../../R-3.6-branch/src/main/identical.c making inlined.d from ../../../../R-3.6-branch/src/main/inlined.c making inspect.d from ../../../../R-3.6-branch/src/main/inspect.c making internet.d from ../../../../R-3.6-branch/src/main/internet.c making iosupport.d from ../../../../R-3.6-branch/src/main/iosupport.c making lapack.d from ../../../../R-3.6-branch/src/main/lapack.c making list.d from ../../../../R-3.6-branch/src/main/list.c making localecharset.d from ../../../../R-3.6-branch/src/main/localecharset.c making logic.d from ../../../../R-3.6-branch/src/main/logic.c making main.d from ../../../../R-3.6-branch/src/main/main.c making mapply.d from ../../../../R-3.6-branch/src/main/mapply.c making match.d from ../../../../R-3.6-branch/src/main/match.c making memory.d from ../../../../R-3.6-branch/src/main/memory.c making names.d from ../../../../R-3.6-branch/src/main/names.c making objects.d from ../../../../R-3.6-branch/src/main/objects.c making options.d from ../../../../R-3.6-branch/src/main/options.c making paste.d from ../../../../R-3.6-branch/src/main/paste.c making platform.d from ../../../../R-3.6-branch/src/main/platform.c making plot.d from ../../../../R-3.6-branch/src/main/plot.c making plot3d.d from ../../../../R-3.6-branch/src/main/plot3d.c making plotmath.d from ../../../../R-3.6-branch/src/main/plotmath.c making print.d from ../../../../R-3.6-branch/src/main/print.c making printarray.d from ../../../../R-3.6-branch/src/main/printarray.c making printvector.d from ../../../../R-3.6-branch/src/main/printvector.c making printutils.d from ../../../../R-3.6-branch/src/main/printutils.c making qsort.d from ../../../../R-3.6-branch/src/main/qsort.c making radixsort.d from ../../../../R-3.6-branch/src/main/radixsort.c making random.d from ../../../../R-3.6-branch/src/main/random.c making raw.d from ../../../../R-3.6-branch/src/main/raw.c making registration.d from ../../../../R-3.6-branch/src/main/registration.c making relop.d from ../../../../R-3.6-branch/src/main/relop.c making rlocale.d from ../../../../R-3.6-branch/src/main/rlocale.c making saveload.d from ../../../../R-3.6-branch/src/main/saveload.c making scan.d from ../../../../R-3.6-branch/src/main/scan.c making seq.d from ../../../../R-3.6-branch/src/main/seq.c making serialize.d from ../../../../R-3.6-branch/src/main/serialize.c making sort.d from ../../../../R-3.6-branch/src/main/sort.c making source.d from ../../../../R-3.6-branch/src/main/source.c making split.d from ../../../../R-3.6-branch/src/main/split.c making sprintf.d from ../../../../R-3.6-branch/src/main/sprintf.c making startup.d from ../../../../R-3.6-branch/src/main/startup.c making subassign.d from ../../../../R-3.6-branch/src/main/subassign.c making subscript.d from ../../../../R-3.6-branch/src/main/subscript.c making subset.d from ../../../../R-3.6-branch/src/main/subset.c making summary.d from ../../../../R-3.6-branch/src/main/summary.c making sysutils.d from ../../../../R-3.6-branch/src/main/sysutils.c making times.d from ../../../../R-3.6-branch/src/main/times.c making unique.d from ../../../../R-3.6-branch/src/main/unique.c making util.d from ../../../../R-3.6-branch/src/main/util.c making version.d from ../../../../R-3.6-branch/src/main/version.c making g_alab_her.d from ../../../../R-3.6-branch/src/main/g_alab_her.c making g_cntrlify.d from ../../../../R-3.6-branch/src/main/g_cntrlify.c making g_fontdb.d from ../../../../R-3.6-branch/src/main/g_fontdb.c making g_her_glyph.d from ../../../../R-3.6-branch/src/main/g_her_glyph.c making Rmain.d from ../../../../R-3.6-branch/src/main/Rmain.c making alloca.d from ../../../../R-3.6-branch/src/main/alloca.c making mkdtemp.d from ../../../../R-3.6-branch/src/main/mkdtemp.c making strncasecmp.d from ../../../../R-3.6-branch/src/main/strncasecmp.c making strdup.d from ../../../../R-3.6-branch/src/main/strdup.c clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/CommandLineArgs.c -o CommandLineArgs.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/Rdynload.c -o Rdynload.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/Renviron.c -o Renviron.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/RNG.c -o RNG.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/agrep.c -o agrep.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/altclasses.c -o altclasses.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/altrep.c -o altrep.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/apply.c -o apply.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/arithmetic.c -o arithmetic.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/array.c -o array.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/attrib.c -o attrib.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/bind.c -o bind.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/builtin.c -o builtin.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/character.c -o character.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/coerce.c -o coerce.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/colors.c -o colors.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/complex.c -o complex.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/connections.c -o connections.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/context.c -o context.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/cum.c -o cum.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/dcf.c -o dcf.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/datetime.c -o datetime.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/debug.c -o debug.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/deparse.c -o deparse.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/devices.c -o devices.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/dotcode.c -o dotcode.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/dounzip.c -o dounzip.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/dstruct.c -o dstruct.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/duplicate.c -o duplicate.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/edit.c -o edit.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/engine.c -o engine.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/envir.c -o envir.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/errors.c -o errors.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/eval.c -o eval.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/format.c -o format.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/gevents.c -o gevents.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/gram.c -o gram.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/gram-ex.c -o gram-ex.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/graphics.c -o graphics.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/grep.c -o grep.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/identical.c -o identical.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/inlined.c -o inlined.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/inspect.c -o inspect.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/internet.c -o internet.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/iosupport.c -o iosupport.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/lapack.c -o lapack.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/list.c -o list.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/localecharset.c -o localecharset.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/logic.c -o logic.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/main.c -o main.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/mapply.c -o mapply.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/match.c -o match.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/memory.c -o memory.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/names.c -o names.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/objects.c -o objects.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/options.c -o options.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/paste.c -o paste.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/platform.c -o platform.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/plot.c -o plot.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/plot3d.c -o plot3d.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/plotmath.c -o plotmath.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/print.c -o print.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/printarray.c -o printarray.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/printvector.c -o printvector.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/printutils.c -o printutils.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/qsort.c -o qsort.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/radixsort.c -o radixsort.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/random.c -o random.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/raw.c -o raw.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/registration.c -o registration.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/relop.c -o relop.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/rlocale.c -o rlocale.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/saveload.c -o saveload.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/scan.c -o scan.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/seq.c -o seq.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/serialize.c -o serialize.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/sort.c -o sort.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/source.c -o source.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/split.c -o split.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/sprintf.c -o sprintf.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/startup.c -o startup.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/subassign.c -o subassign.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/subscript.c -o subscript.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/subset.c -o subset.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/summary.c -o summary.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/sysutils.c -o sysutils.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/times.c -o times.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/unique.c -o unique.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/util.c -o util.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/version.c -o version.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/g_alab_her.c -o g_alab_her.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/g_cntrlify.c -o g_cntrlify.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/g_fontdb.c -o g_fontdb.o clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/g_her_glyph.c -o g_her_glyph.o gfortran -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/xxxpr.f -o xxxpr.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -fopenmp -L/usr/local/lib -install_name libR.dylib -compatibility_version 3.6.0 -current_version 3.6.3 -headerpad_max_install_names -o libR.dylib CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a ../extra/intl/libintl.a ../extra/tzone/libtz.a -L"../../lib" -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -Wl,-framework -Wl,CoreFoundation -lreadline -L/usr/local/lib -lpcre2-8 -lpcre -llzma -lbz2 -lz -licucore -ldl -lm -liconv mkdir /Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/bin/exec clang -I../../../../R-3.6-branch/src/extra -I. -I../../src/include -I../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I../../../../R-3.6-branch/src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../R-3.6-branch/src/main/Rmain.c -o Rmain.o clang -fopenmp -L"../../lib" -L/usr/local/lib -o R.bin Rmain.o -lR -lRblas making Rhttpd.d from ../../../../../R-3.6-branch/src/modules/internet/Rhttpd.c making Rsock.d from ../../../../../R-3.6-branch/src/modules/internet/Rsock.c making internet.d from ../../../../../R-3.6-branch/src/modules/internet/internet.c making libcurl.d from ../../../../../R-3.6-branch/src/modules/internet/libcurl.c making devX11.d from ../../../../../R-3.6-branch/src/modules/X11/devX11.c making Lapack.d from ../../../../../R-3.6-branch/src/modules/lapack/Lapack.c making nanoftp.d from ../../../../../R-3.6-branch/src/modules/internet/nanoftp.c making nanohttp.d from ../../../../../R-3.6-branch/src/modules/internet/nanohttp.c making rotated.d from ../../../../../R-3.6-branch/src/modules/X11/rotated.c making sock.d from ../../../../../R-3.6-branch/src/modules/internet/sock.c making rbitmap.d from ../../../../../R-3.6-branch/src/modules/X11/rbitmap.c making sockconn.d from ../../../../../R-3.6-branch/src/modules/internet/sockconn.c gfortran -fPIC -Wall -g -O2 -msse2 -mfpmath=sse -c ../../../../../R-3.6-branch/src/modules/lapack/dlamch.f -o dlamch.o gfortran -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f -o dlapack.o gfortran -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f -o cmplx.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/modules/internet/Rhttpd.c -o Rhttpd.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/modules/internet/Rsock.c -o Rsock.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/modules/internet/internet.c -o internet.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/modules/internet/libcurl.c -o libcurl.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/modules/internet/nanoftp.c -o nanoftp.o clang -I/opt/X11/include/libpng16 -I/usr/local/include -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I/usr/X11/include -I/opt/X11/include/cairo -I/opt/X11/include/pixman-1 -I/opt/X11/include -I/opt/X11/include/freetype2 -I/opt/X11/include/libpng16 -I/opt/X11/include -I../../../../../R-3.6-branch/src/library/grDevices/src/cairo -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/modules/X11/devX11.c -o devX11.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/modules/internet/nanohttp.c -o nanohttp.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/modules/internet/sock.c -o sock.o clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/modules/internet/sockconn.c -o sockconn.o clang -I/opt/X11/include/libpng16 -I/usr/local/include -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I/usr/X11/include -I/opt/X11/include/cairo -I/opt/X11/include/pixman-1 -I/opt/X11/include -I/opt/X11/include/freetype2 -I/opt/X11/include/libpng16 -I/opt/X11/include -I../../../../../R-3.6-branch/src/library/grDevices/src/cairo -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/modules/X11/rotated.c -o rotated.o clang -I/opt/X11/include/libpng16 -I/usr/local/include -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I/usr/X11/include -I/opt/X11/include/cairo -I/opt/X11/include/pixman-1 -I/opt/X11/include -I/opt/X11/include/freetype2 -I/opt/X11/include/libpng16 -I/opt/X11/include -I../../../../../R-3.6-branch/src/library/grDevices/src/cairo -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/modules/X11/rbitmap.c -o rbitmap.o clang -I/opt/X11/include/libpng16 -I/usr/local/include -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -I/usr/X11/include -I/opt/X11/include/cairo -I/opt/X11/include/pixman-1 -I/opt/X11/include -I/opt/X11/include/freetype2 -I/opt/X11/include/libpng16 -I/opt/X11/include -I../../../../../R-3.6-branch/src/library/grDevices/src/cairo -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/modules/X11/dataentry.c -o dataentry.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L"../../../lib" -L/usr/local/lib -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -lcurl -lR -Wl,-framework -Wl,CoreFoundation mkdir /Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/modules clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L"../../../lib" -L/usr/local/lib -o R_X11.so devX11.o rotated.o rbitmap.o -L/usr/local/lib -ltiff -ljpeg -L/opt/X11/lib -lpng16 -lSM -lICE -L/opt/X11/lib -lz -lcairo -lz -lpixman-1 -lfontconfig -lexpat -lfreetype -lz -lbz2 -lpng16 -lz -lxcb-shm -lX11-xcb -lxcb-render -lXrender -lXext -lX11 -lxcb -lXau -lXdmcp -L/opt/X11/lib -lX11 -lXt -lXmu -lR -Wl,-framework -Wl,CoreFoundation
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:1780:19: K = SCALE( I ) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:1794:19: K = SCALE( I ) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:2456:21: D( I ) = ALPHA 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:2475:24: E( I ) = ALPHA 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:2500:21: D( I ) = ALPHA 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:2519:24: E( I ) = ALPHA 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:21724:21: D( I ) = ALPHA 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:21764:24: E( I ) = ALPHA 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:21808:21: D( I ) = ALPHA 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:21842:24: E( I ) = ALPHA 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:3759:21: HSWORK = WORK( 1 ) 1 Warning: Possible change of value in conversion from COMPLEX(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:51010:18: LWKOPT = WORK( 1 ) 1 Warning: Possible change of value in conversion from COMPLEX(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:18896:18: W( 1 ) = A( 1, 1 ) 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:38222:26: E( I-1 ) = ALPHA 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:38276:24: E( I ) = ALPHA 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:20030:24: D( J ) = A( J, J ) 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:19616:21: E( I ) = ALPHA 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:19644:23: D( I+1 ) = A( I+1, I+1 ) 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:19647:18: D( 1 ) = A( 1, 1 ) 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:19660:21: E( I ) = ALPHA 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:19689:21: D( I ) = A( I, I ) 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:19692:18: D( N ) = A( N, N ) 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:20062:24: D( J ) = A( J, J ) 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:19287:18: W( 1 ) = A( 1, 1 ) 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:39440:18: AII = A( I, I ) 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:39459:18: AII = A( I, I ) 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:39881:18: AJJ = DBLE( A( J, J ) ) - ZDOTC( J-1, A( 1, J ), 1, 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:39908:18: AJJ = DBLE( A( J, J ) ) - ZDOTC( J-1, A( J, 1 ), LDA, 1 Warning: Possible change of value in conversion from COMPLEX(8) to REAL(8) at (1) [-Wconversion] clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L"../../../lib" -L/usr/local/lib -o R_de.so dataentry.o -lSM -lICE -L/opt/X11/lib -lz -lcairo -lz -lpixman-1 -lfontconfig -lexpat -lfreetype -lz -lbz2 -lpng16 -lz -lxcb-shm -lX11-xcb -lxcb-render -lXrender -lXext -lX11 -lxcb -lXau -lXdmcp -L/opt/X11/lib -lX11 -lXt -lXmu -lR -Wl,-framework -Wl,CoreFoundation
../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:42313:0: INTEGER I, INFO, IX, J, JX, KX Warning: 'kx' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:42941:0: $ CALL ZSWAP( N-KP, A( KP+1, KK ), 1, A( KP+1, KP ), 1 ) Warning: 'imax' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:23899:0: INTEGER I, IMAX, J, JLAM, JMAX, JP, K2, N1, N1P1, N2 Warning: 'jlam' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:28093:0: DOUBLE PRECISION SUM, VALUE Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:27577:0: DOUBLE PRECISION ABSA, SUM, VALUE Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:27345:0: DOUBLE PRECISION SUM, VALUE, TEMP Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:15060:0: A( N, N ) = DCMPLX( SMIN, ZERO ) Warning: 'smin' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:15042:0: $ CALL ZSWAP( N, A( 1, JPV ), 1, A( 1, I ), 1 ) Warning: 'jpv' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:15036:0: $ CALL ZSWAP( N, A( IPV, 1 ), LDA, A( I, 1 ), LDA ) Warning: 'ipv' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:6965:19: K = SCALE( I ) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:6979:19: K = SCALE( I ) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:9255:21: HSWORK = WORK( 1 ) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:9870:21: HSWORK = WORK( 1 ) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16900:28: LWORK_DGEQRF=DUM(1) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16904:28: LWORK_DORMQR=DUM(1) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16919:28: LWORK_DGEBRD=DUM(1) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16923:28: LWORK_DORMBR=DUM(1) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98805:18: LWKOPT = WORK( 1 ) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16927:28: LWORK_DORGBR=DUM(1) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16951:31: LWORK_DGELQF=DUM(1) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16955:31: LWORK_DGEBRD=DUM(1) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16959:31: LWORK_DORMBR=DUM(1) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16963:31: LWORK_DORGBR=DUM(1) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16967:31: LWORK_DORMLQ=DUM(1) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16987:31: LWORK_DGEBRD=DUM(1) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16991:31: LWORK_DORMBR=DUM(1) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:16995:31: LWORK_DORGBR=DUM(1) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:36578:13: LOPT = WORK( 1 ) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:35520:13: LOPT = WORK( M+NP+1 ) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:36876:13: LOPT = WORK( 1 ) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:36224:13: LOPT = WORK( P+MN+1 ) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:124474:14: LWMIN = MAX( DBLE( LWMIN ), DBLE( WORK( 1 ) ) ) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:124475:15: LIWMIN = MAX( DBLE( LIWMIN ), DBLE( IWORK( 1 ) ) ) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:137193:13: LOPT = MAX( DBLE( LOPT ), DBLE( WORK( 1 ) ) ) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:137194:14: LIOPT = MAX( DBLE( LIOPT ), DBLE( IWORK( 1 ) ) ) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:138372:21: LWKOPT = WORK(1) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:78161:34: SUBROUTINE DLARRV( N, VL, VU, D, L, PIVMIN, 1 Warning: Unused dummy argument 'vu' at (1) [-Wunused-dummy-argument] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:74644:54: SUBROUTINE DLARRC( JOBT, N, VL, VU, D, E, PIVMIN, 1 Warning: Unused dummy argument 'pivmin' at (1) [-Wunused-dummy-argument] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:46417:45: $ RELTOL, PIVMIN, D, E, E2, NVAL, AB, C, MOUT, 1 Warning: Unused dummy argument 'e' at (1) [-Wunused-dummy-argument] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:58843:55: INTEGER FUNCTION DLANEG( N, D, LLD, SIGMA, PIVMIN, R ) 1 Warning: Unused dummy argument 'pivmin' at (1) [-Wunused-dummy-argument] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:27841:0: DOUBLE PRECISION SUM, VALUE Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] SRC/iparam2stage.F:612:68: Warning: Unused dummy argument 'lwork' at (1) [-Wunused-dummy-argument] SRC/iparam2stage.F:612:51: Warning: Unused dummy argument 'n' at (1) [-Wunused-dummy-argument] SRC/iparam2stage.F:612:48: Warning: Unused dummy argument 'opts' at (1) [-Wunused-dummy-argument] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:20932:0: IF( ILZ ) Warning: 'ilz' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:20874:0: IF( ILQ ) THEN Warning: 'ilq' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:20926:0: IF( ILSCHR ) THEN Warning: 'ilschr' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:129267:23: $ ABSTOL, M, W, Z, LDZ, ISUPPZ, WORK, LWORK, IWORK, 1 Warning: Unused dummy argument 'abstol' at (1) [-Wunused-dummy-argument] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:25730:0: $ DIFRJ ) / ( POLES( I, 2 )+DJ ) Warning: 'difrj' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:24670:0: $ CALL ZSCAL( I2-I, DCONJG( TEMP ), H( I, I+1 ), LDH ) Warning: 'i2' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:25007:0: A( K+NB, NB ) = EI Warning: 'IMAGPART_EXPR ' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:25007:0: Warning: 'REALPART_EXPR ' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:47052:0: SCALE = SCALE2 Warning: 'scale2' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:95440:0: X( J ) = X( J ) / TJJS - SUMJ Warning: 'tjjs' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:49130:0: ELSE IF( LWORK.LT.LWMIN .AND. .NOT.LQUERY ) THEN Warning: 'lwmin' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:55339:0: IF( LWORK.LT.NW*NB+TSIZE ) THEN Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:94315:0: X( J ) = X( J ) / TJJS - SUMJ Warning: 'tjjs' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:52056:0: IF( NB.GT.1 .AND. NB.LT.K ) THEN Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:93199:0: X( J ) = X( J ) / TJJS - SUMJ Warning: 'tjjs' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:139859:0: $ CALL DSWAP( N-KP, A( KP+1, KK ), 1, A( KP+1, KP ), 1 ) Warning: 'imax' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:4925:0: DO 40 I = ILO, IHI - 1 - NX, NB Warning: 'nx' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:61481:0: DOUBLE PRECISION ANORM, SCALE, SUM Warning: 'anorm' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:126791:0: DO 80 J = KK + 1, KP - 1 Warning: 'imax' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:6427:0: IF( M.GE.MNTHR ) THEN Warning: 'mnthr' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:11909:0: IF( LWORK.GE.WRKBL+LDA*N ) THEN Warning: 'wrkbl' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:11192:0: IF( M.GE.MNTHR ) THEN Warning: 'mnthr' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:14676:0: ROWCND = MAX( RCMIN, SMLNUM ) / MIN( RCMAX, BIGNUM ) Warning: 'smlnum' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:14676:0: Warning: 'bignum' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:155330:0: $ AP( JCLAST ), AP( JC+1 ), 1 ) Warning: 'jclast' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/cmplx.f:52847:0: IF( NB.GT.1 .AND. NB.LT.K ) THEN Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:80191:0: ISEED( 4 ) = IT4 Warning: 'it4' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:80190:0: ISEED( 3 ) = IT3 Warning: 'it3' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:80189:0: ISEED( 2 ) = IT2 Warning: 'it2' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:80188:0: ISEED( 1 ) = IT1 Warning: 'it1' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:129694:0: IF( ABS( XJ-XJM ).GT.ORTOL ) Warning: 'xjm' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:129694:0: Warning: 'ortol' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:129680:0: $ ABS( WORK( INDRV1+JMAX ) ) Warning: 'onenrm' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:129505:0: INTEGER B1, BLKSIZ, BN, GPIND, I, IINFO, INDRV1, Warning: 'gpind' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:129714:0: IF( NRM.LT.DTPCRT ) Warning: 'dtpcrt' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:62731:0: DOUBLE PRECISION SUM, VALUE Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:62336:0: DOUBLE PRECISION SUM, VALUE Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:61972:0: DOUBLE PRECISION SUM, VALUE Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:61690:0: DOUBLE PRECISION ABSA, SUM, VALUE Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:61213:0: DOUBLE PRECISION ABSA, SUM, VALUE Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:59985:0: DOUBLE PRECISION ABSA, SUM, VALUE Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:50542:0: INTEGER I, IMAX, J, JLAM, JMAX, JP, K2, N1, N1P1, N2 Warning: 'jlam' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:49858:0: $ TAU = TAU*SCLINV Warning: 'sclinv' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:47698:0: $ N2, NJ, PJ Warning: 'pj' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:59748:0: DOUBLE PRECISION SUM, VALUE Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:59537:0: DOUBLE PRECISION ANORM, SCALE, SUM, TEMP Warning: 'anorm' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:59325:0: DOUBLE PRECISION SUM, VALUE, TEMP Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:30198:0: A( N, N ) = SMIN Warning: 'smin' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:30180:0: $ CALL DSWAP( N, A( 1, JPV ), 1, A( 1, I ), 1 ) Warning: 'jpv' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:30174:0: $ CALL DSWAP( N, A( IPV, 1 ), LDA, A( I, 1 ), LDA ) Warning: 'ipv' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:57445:0: $ DIFRJ ) / ( POLES( I, 2 )+DJ ) Warning: 'difrj' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:43297:0: IF( ILZ ) THEN Warning: 'ilz' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:43232:0: IF( ILQ ) THEN Warning: 'ilq' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:43288:0: IF( ILSCHR ) THEN Warning: 'ilschr' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:91527:0: IF( JPSV.NE.I ) Warning: 'jpsv' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:91521:0: IF( IPSV.NE.I ) THEN Warning: 'ipsv' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:55334:0: IF( I2.GT.I ) Warning: 'i2' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:55662:0: A( K+NB, NB ) = EI Warning: 'ei' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:160229:0: IF( LWORK.LT.LWMIN .AND. .NOT.LQUERY ) THEN Warning: 'lwmin' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:160231:0: ELSE IF( LIWORK.LT.LIWMIN .AND. .NOT.LQUERY ) THEN Warning: 'liwmin' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:59100:0: DOUBLE PRECISION SUM, VALUE, TEMP Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:85479:0: INTEGER I, IDXI, IDXJ, IDXJP, J, JP, JPREV, K2, M, N, Warning: 'jprev' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:86073:0: $ / ( DSIGMA( I )+DJ ) Warning: 'difrj' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:82631:0: INTEGER CT, I, IDXI, IDXJ, IDXJP, J, JP, JPREV, K2, M, Warning: 'jprev' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:89020:0: TAU = S Warning: 's' may be used uninitialized in this function [-Wmaybe-uninitialized] SRC/iparam2stage.F:770:0: Warning: 'ns' may be used uninitialized in this function [-Wmaybe-uninitialized] SRC/iparam2stage.F:761:0: Warning: 'nh' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:46944:0: $ IGIVPT, INDXQ, IPERM, IPRMPT, IQ, IQPTR, IWREM, Warning: 'iwrem' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:46944:0: Warning: 'iqptr' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:46944:0: Warning: 'iq' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:46944:0: Warning: 'iprmpt' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:46944:0: Warning: 'iperm' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:46944:0: Warning: 'igivpt' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:46943:0: INTEGER CURLVL, CURPRB, CURR, I, IGIVCL, IGIVNM, Warning: 'igivcl' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:103103:0: IF( LWORK.LT.NW*NB+TSIZE ) THEN Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:99847:0: IF( NB.GT.1 .AND. NB.LT.K ) THEN Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:135933:0: WORK( 1 ) = LWKOPT Warning: 'lwkopt' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:75509:0: IF( W( JE ).GE.WUL .AND. IDISCU.GT.0 ) THEN Warning: 'wul' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:75492:0: IF( W( JE ).LE.WLU .AND. IDISCL.GT.0 ) THEN Warning: 'wlu' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:76030:0: $ ((IRANGE.EQ.VALRNG).AND.(D(1).GT.VL).AND.(D(1).LE.VU)).OR. Warning: 'irange' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:76523:0: WBEGIN = WEND + 1 Warning: 'wend' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:76271:0: IF(MB.EQ.1) THEN Warning: 'mb' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:104360:0: IF( LWORK.LT.NW*NB+TSIZE ) THEN Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:22255:0: IF( NB.GT.1 .AND. NB.LT.K ) THEN Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:152534:0: SCALE = SCALE2 Warning: 'scale2' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:150826:0: DIF( KS ) = COND Warning: 'cond' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:1544:0: $ WORK( WSTART ), IWORK, INFO ) Warning: 'z' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:1544:0: Warning: 'poles' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:1544:0: Warning: 'ivt' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:1544:0: Warning: 'is' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:1544:0: Warning: 'ic' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:1544:0: Warning: 'givnum' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:1544:0: Warning: 'givcol' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:1544:0: Warning: 'difr' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:1544:0: Warning: 'difl' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:104730:0: IF( LWORK.LT.NW*NB+TSIZE ) THEN Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:163801:0: IF( NB.GT.1 .AND. NB.LT.M ) THEN Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:13194:0: DO 40 I = ILO, IHI - 1 - NX, NB Warning: 'nx' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:5484:0: ROWCND = MAX( RCMIN, SMLNUM ) / MIN( RCMAX, BIGNUM ) Warning: 'smlnum' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:5484:0: Warning: 'bignum' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:9798:0: $ MAXWRK, MINWRK Warning: 'maxwrk' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:17084:0: IF( M.GE.MNTHR ) THEN Warning: 'mnthr' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:19000:0: IF( NB.GT.1 .AND. NB.LT.K ) THEN Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:27727:0: IF( IE.LT.2 ) THEN Warning: 'ie' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:25430:0: ELSE IF( LWORK.GE.WRKBL+( LDA + N )*N ) THEN Warning: 'wrkbl' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:24932:0: IF( M.GE.MNTHR ) THEN Warning: 'mnthr' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:24492:0: INTEGER BDSPAC, BLK, CHUNK, I, IE, IERR, IR, ISCL, Warning: 'bdspac' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:29815:0: ROWCND = MAX( RCMIN, SMLNUM ) / MIN( RCMAX, BIGNUM ) Warning: 'smlnum' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:29815:0: Warning: 'bignum' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:55963:0: A( K+NB, NB ) = EI Warning: 'ei' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:60344:0: DOUBLE PRECISION SCALE, S, VALUE, AA, TEMP Warning: 'value' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98056:0: $ WORK(IORBDB), LORBDBWORK, CHILDINFO ) Warning: 'itauq2' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98056:0: Warning: 'itauq1' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98056:0: Warning: 'itaup2' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98056:0: Warning: 'itaup1' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98113:0: $ WORK(IORGQR), LORGQRWORK, INFO ) Warning: 'iorgqr' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98090:0: $ WORK(IORGLQ), LORGLQWORK, INFO ) Warning: 'iorglq' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98056:0: $ WORK(IORBDB), LORBDBWORK, CHILDINFO ) Warning: 'iorbdb' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98130:0: $ WORK(IB22E), WORK(IBBCSD), LBBCSDWORK, INFO ) Warning: 'ibbcsd' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98130:0: Warning: 'ib22e' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98130:0: Warning: 'ib22d' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98130:0: Warning: 'ib21e' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98130:0: Warning: 'ib21d' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98130:0: Warning: 'ib12e' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98130:0: Warning: 'ib12d' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98130:0: Warning: 'ib11e' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:98130:0: Warning: 'ib11d' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:100635:0: IF( NB.GT.1 .AND. NB.LT.K ) THEN Warning: 'nb' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:107059:0: SCOND = MAX( SMIN, SMLNUM ) / MIN( SMAX, BIGNUM ) Warning: 'smlnum' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:107059:0: Warning: 'bignum' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:110946:0: SCOND = MAX( SMIN, SMLNUM ) / MIN( SMAX, BIGNUM ) Warning: 'smlnum' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:110946:0: Warning: 'bignum' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:113627:0: SCOND = MAX( SMIN, SMLNUM ) / MIN( SMAX, BIGNUM ) Warning: 'smlnum' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../R-3.6-branch/src/modules/lapack/dlapack.f:113627:0: Warning: 'bignum' may be used uninitialized in this function [-Wmaybe-uninitialized] clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -fopenmp -L/usr/local/lib -o libRlapack.dylib dlamch.o dlapack.o cmplx.o -install_name libRlapack.dylib -compatibility_version 3.6.0 -current_version 3.6.3 -headerpad_max_install_names -L"../../../lib" -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L"../../../lib" -lR
ld: warning: could not create compact unwind for _dpbtrf_: stack subq instruction is too different from dwarf stack size ld: warning: could not create compact unwind for _dhseqr_: stack subq instruction is too different from dwarf stack size clang -I. -I../../../src/include -I../../../../../R-3.6-branch/src/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../R-3.6-branch/src/modules/lapack/Lapack.c -o Lapack.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L"../../../lib" -L/usr/local/lib -o lapack.so Lapack.o -lR -Wl,-framework -Wl,CoreFoundation -L"../../../lib" -lRlapack -L"../../../lib" -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm /Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib/libRlapack.dylib is unchanged mkdir ../../library building system startup profile mkdir ../../../library/base mkdir ../../../library/base/R building package 'translations' mkdir ../../../library/translations building package 'base' mkdir ../../../library/base/demo
mv: all.R: set owner/group (was: 501/0): Operation not permitted building package 'tools' mkdir ../../../library/tools mkdir ../../../library/tools/R
mv: all.R: set owner/group (was: 501/0): Operation not permitted making text.d from ../../../../../../R-3.6-branch/src/library/tools/src/text.c making init.d from ../../../../../../R-3.6-branch/src/library/tools/src/init.c making Rmd5.d from ../../../../../../R-3.6-branch/src/library/tools/src/Rmd5.c making md5.d from ../../../../../../R-3.6-branch/src/library/tools/src/md5.c making install.d from ../../../../../../R-3.6-branch/src/library/tools/src/install.c making signals.d from ../../../../../../R-3.6-branch/src/library/tools/src/signals.c making getfmts.d from ../../../../../../R-3.6-branch/src/library/tools/src/getfmts.c making http.d from ../../../../../../R-3.6-branch/src/library/tools/src/http.c making gramLatex.d from ../../../../../../R-3.6-branch/src/library/tools/src/gramLatex.c clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/tools/src/text.c -o text.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/tools/src/init.c -o init.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/tools/src/Rmd5.c -o Rmd5.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/tools/src/md5.c -o md5.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/tools/src/signals.c -o signals.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/tools/src/install.c -o install.o making gramRd.d from ../../../../../../R-3.6-branch/src/library/tools/src/gramRd.c clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/tools/src/getfmts.c -o getfmts.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/tools/src/http.c -o http.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/tools/src/gramLatex.c -o gramLatex.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/tools/src/gramRd.c -o gramRd.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir ../../../../library/tools/libs installing 'sysdata.rda' building package 'compiler' mkdir ../../../library/compiler mkdir ../../../library/compiler/R
mv: all.R: set owner/group (was: 501/0): Operation not permitted byte-compiling package 'compiler' byte-compiling package 'base' byte-compiling package 'tools' building package 'utils' mkdir ../../../library/utils mkdir ../../../library/utils/doc mkdir ../../../library/utils/R mkdir ../../../library/utils/Sweave mkdir ../../../library/utils/misc
mv: all.R: set owner/group (was: 501/0): Operation not permitted clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/utils/src/init.c -o init.o making init.d from ../../../../../../R-3.6-branch/src/library/utils/src/init.c clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/utils/src/io.c -o io.o making io.d from ../../../../../../R-3.6-branch/src/library/utils/src/io.c making size.d from ../../../../../../R-3.6-branch/src/library/utils/src/size.c making sock.d from ../../../../../../R-3.6-branch/src/library/utils/src/sock.c making stubs.d from ../../../../../../R-3.6-branch/src/library/utils/src/stubs.c making utils.d from ../../../../../../R-3.6-branch/src/library/utils/src/utils.c clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/utils/src/size.c -o size.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/utils/src/sock.c -o sock.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/utils/src/stubs.c -o stubs.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/utils/src/utils.c -o utils.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir ../../../../library/utils/libs installing 'sysdata.rda' byte-compiling package 'utils' building package 'grDevices' mkdir ../../../library/grDevices mkdir ../../../library/grDevices/R mkdir ../../../library/grDevices/afm
mv: all.R: set owner/group (was: 501/0): Operation not permitted mkdir ../../../library/grDevices/enc mkdir ../../../library/grDevices/icc making axis_scales.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/axis_scales.c making chull.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/chull.c making devices.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/devices.c making init.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/init.c making stubs.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/stubs.c making devCairo.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/devCairo.c making colors.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/colors.c making devPicTeX.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/devPicTeX.c making devPS.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/devPS.c making devQuartz.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/devQuartz.c making qdBitmap.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/qdBitmap.c clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/grDevices/src/axis_scales.c -o axis_scales.o making qdPDF.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/qdPDF.c clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/grDevices/src/chull.c -o chull.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/grDevices/src/devices.c -o devices.o making qdCocoa.d from ../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/grDevices/src/init.c -o init.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/grDevices/src/stubs.c -o stubs.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/grDevices/src/colors.c -o colors.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/grDevices/src/devCairo.c -o devCairo.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/grDevices/src/devPicTeX.c -o devPicTeX.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/grDevices/src/devPS.c -o devPS.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/grDevices/src/devQuartz.c -o devQuartz.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/grDevices/src/qdBitmap.c -o qdBitmap.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/grDevices/src/qdPDF.c -o qdPDF.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -fobjc-exceptions -c ../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m -o qdCocoa.o
../../../../../../R-3.6-branch/src/library/grDevices/src/qdBitmap.c:61:39: warning: 'CFURLCreateStringByAddingPercentEscapes' is deprecated: first deprecated in macOS 10.11 - Use [NSString stringByAddingPercentEncodingWithAllowedCharacters:] instead, which always uses the recommended UTF-8 encoding, and which encodes for a specific URL component or subcomponent (since each URL component or subcomponent has different rules for what characters are valid). [-Wdeprecated-declarations] CFStringRef pathEscaped = CFURLCreateStringByAddingPercentEscapes(kCFAllocatorDefault, pathString, NULL, NULL, kCFStringEncodingUTF8); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreFoundation.framework/Headers/CFURL.h:395:13: note: 'CFURLCreateStringByAddingPercentEscapes' has been explicitly marked deprecated here CFStringRef CFURLCreateStringByAddingPercentEscapes(CFAllocatorRef allocator, CFStringRef originalString, CFStringRef charactersToLeaveUnescaped, CFStringRef legalURLCharactersToBeEscaped, CFStringEncoding encoding) CF_DEPRECATED(10_0, 10_11, 2_0, 9_0, "Use [NSString stringByAddingPercentEncodingWithAllowedCharacters:] instead, which always uses the recommended UTF-8 encoding, and which encodes for a specific URL component or subcomponent (since each URL component or subcomponent has different rules for what characters are valid)."); ^ ../../../../../../R-3.6-branch/src/library/grDevices/src/devQuartz.c:646:23: warning: 'ATSFontFindFromName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations] atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here ATSFontFindFromName( ^ ../../../../../../R-3.6-branch/src/library/grDevices/src/devQuartz.c:648:27: warning: 'ATSFontFindFromPostScriptName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations] atsFont = ATSFontFindFromPostScriptName(cfFontName, kATSOptionFlagsDefault); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:820:1: note: 'ATSFontFindFromPostScriptName' has been explicitly marked deprecated here ATSFontFindFromPostScriptName( ^ ../../../../../../R-3.6-branch/src/library/grDevices/src/devQuartz.c:675:27: warning: 'ATSFontFindFromName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations] atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here ATSFontFindFromName( ^ ../../../../../../R-3.6-branch/src/library/grDevices/src/devQuartz.c:676:41: warning: 'ATSFontFindFromPostScriptName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations] if (!atsFont) atsFont = ATSFontFindFromPostScriptName(cfFontName, kATSOptionFlagsDefault); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:820:1: note: 'ATSFontFindFromPostScriptName' has been explicitly marked deprecated here ATSFontFindFromPostScriptName( ^ ../../../../../../R-3.6-branch/src/library/grDevices/src/devQuartz.c:682:35: warning: 'ATSFontFindFromName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations] atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here ATSFontFindFromName( ^ ../../../../../../R-3.6-branch/src/library/grDevices/src/devQuartz.c:688:39: warning: 'ATSFontFindFromName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations] atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here ATSFontFindFromName( ^ ../../../../../../R-3.6-branch/src/library/grDevices/src/devQuartz.c:696:35: warning: 'ATSFontFindFromName' is deprecated: first deprecated in macOS 10.8 - Use CTFontCreateWithName() [-Wdeprecated-declarations] atsFont = ATSFontFindFromName(cfFontName, kATSOptionFlagsDefault); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/ATS.framework/Headers/ATSFont.h:803:1: note: 'ATSFontFindFromName' has been explicitly marked deprecated here ATSFontFindFromName( ^ ../../../../../../R-3.6-branch/src/library/grDevices/src/devQuartz.c:715:12: warning: 'CGFontCreateWithPlatformFont' is deprecated: first deprecated in macOS 10.6 [-Wdeprecated-declarations] return CGFontCreateWithPlatformFont(&atsFont); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreGraphics.framework/Headers/CGFont.h:64:32: note: 'CGFontCreateWithPlatformFont' has been explicitly marked deprecated here CG_EXTERN CGFontRef __nullable CGFontCreateWithPlatformFont( ^ ../../../../../../R-3.6-branch/src/library/grDevices/src/devQuartz.c:997:5: warning: 'CGContextShowGlyphsWithAdvances' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations] CGContextShowGlyphsWithAdvances(ctx,glyphs, g_adv, len); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreGraphics.framework/Headers/CGContext.h:1066:16: note: 'CGContextShowGlyphsWithAdvances' has been explicitly marked deprecated here CG_EXTERN void CGContextShowGlyphsWithAdvances(CGContextRef __nullable c, ^ 1 warning generated. ../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m:101:23: warning: sending 'QuartzCocoaView *' to parameter of incompatible type 'id _Nullable' [window setDelegate: view]; ^~~~ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSWindow.h:317:51: note: passing argument to parameter 'delegate' here @property (nullable, assign) id delegate; ^ ../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m:85:14: warning: unused variable 'canvasColor' [-Wunused-variable] NSColor* canvasColor = nil; ^ ../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m:268:6: warning: 'setRequiredFileType:' is deprecated: first deprecated in macOS 10.6 [-Wdeprecated-declarations] [sp setRequiredFileType:@"pdf"]; ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSSavePanel.h:289:1: note: 'setRequiredFileType:' has been explicitly marked deprecated here - (void)setRequiredFileType:(nullable NSString *)type NS_DEPRECATED_MAC(10_0, 10_6); ^ ../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m:270:19: warning: 'runModalForDirectory:file:' is deprecated: first deprecated in macOS 10.6 [-Wdeprecated-declarations] int answer = [sp runModalForDirectory:nil file:@"Rplot.pdf"]; ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSSavePanel.h:297:1: note: 'runModalForDirectory:file:' has been explicitly marked deprecated here - (NSInteger)runModalForDirectory:(nullable NSString *)path file:(nullable NSString *)name NS_DEPRECATED_MAC(10_0, 10_6); ^ ../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m:271:15: warning: 'NSOKButton' is deprecated: first deprecated in macOS 10.10 - Use NSModalResponseOK instead [-Wdeprecated-declarations] if(answer == NSOKButton) ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSPanel.h:85:5: note: 'NSOKButton' has been explicitly marked deprecated here NSOKButton NS_ENUM_DEPRECATED_MAC(10_0, 10_10, "Use NSModalResponseOK instead") = 1, // NSModalResponseOK should be used instead (in NSWindow) ^ ../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m:272:29: warning: 'filename' is deprecated: first deprecated in macOS 10.6 [-Wdeprecated-declarations] 9 if (![self writeAsPDF:[sp filename]]) NSBeep(); warnings generated ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/AppKit.framework/Headers/NSSavePanel.h:279. :1: note: 'filename' has been explicitly marked deprecated here - (NSString *)filename NS_DEPRECATED_MAC(10_0, 10_6); ^ ../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m:615:13: warning: 'GetFrontProcess' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations] if (GetFrontProcess(&frProc) == noErr) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:434:1: note: 'GetFrontProcess' has been explicitly marked deprecated here GetFrontProcess(ProcessSerialNumber * PSN) AVAILABLE_MAC_OS_X_VERSION_10_0_AND_LATER_BUT_DEPRECATED_IN_MAC_OS_X_VERSION_10_9; ^ ../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m:616:17: warning: 'GetCurrentProcess' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations] if (GetCurrentProcess(&myProc) == noErr) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:415:1: note: 'GetCurrentProcess' has been explicitly marked deprecated here MacGetCurrentProcess(ProcessSerialNumber * PSN) AVAILABLE_MAC_OS_X_VERSION_10_0_AND_LATER_BUT_DEPRECATED_IN_MAC_OS_X_VERSION_10_9; ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:412:34: note: expanded from macro 'MacGetCurrentProcess' #define MacGetCurrentProcess GetCurrentProcess ^ ../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m:617:21: warning: 'SameProcess' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations] if (SameProcess(&frProc, &myProc, &sameProc) == noErr && !sameProc) { ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:696:1: note: 'SameProcess' has been explicitly marked deprecated here SameProcess( ^ ../../../../../../R-3.6-branch/src/library/grDevices/src/qdCocoa.m:620:17: warning: 'SetFrontProcess' is deprecated: first deprecated in macOS 10.9 [-Wdeprecated-declarations] SetFrontProcess(&myProc); ^ /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/ApplicationServices.framework/Frameworks/HIServices.framework/Headers/Processes.h:603:1: note: 'SetFrontProcess' has been explicitly marked deprecated here SetFrontProcess(const ProcessSerialNumber * PSN) AVAILABLE_MAC_OS_X_VERSION_10_0_AND_LATER_BUT_DEPRECATED_IN_MAC_OS_X_VERSION_10_9; ^ 10 warnings generated. clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o qdBitmap.o qdPDF.o qdCocoa.o -framework AppKit -lz -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir ../../../../library/grDevices/libs making cairoBM.d from ../../../../../../../R-3.6-branch/src/library/grDevices/src/cairo/cairoBM.c clang -I. -I../../../../../src/include -I../../../../../../../R-3.6-branch/src/include -I/opt/X11/include/cairo -I/opt/X11/include/pixman-1 -I/opt/X11/include -I/opt/X11/include/freetype2 -I/opt/X11/include/libpng16 -I/opt/X11/include -I../../../../../../../R-3.6-branch/src/modules/X11 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../../R-3.6-branch/src/library/grDevices/src/cairo/cairoBM.c -o cairoBM.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L"../../../../../lib" -L/usr/local/lib -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -L/usr/local/lib -ltiff -ljpeg -L/opt/X11/lib -lpng16 -L/opt/X11/lib -lz -lcairo -lz -lpixman-1 -lfontconfig -lexpat -lfreetype -lz -lbz2 -lpng16 -lz -lxcb-shm -lX11-xcb -lxcb-render -lXrender -lXext -lX11 -lxcb -lXau -lXdmcp -L"../../../../../lib" -lR -Wl,-framework -Wl,CoreFoundation byte-compiling package 'grDevices' building package 'graphics' mkdir ../../../library/graphics mkdir ../../../library/graphics/R
mv: all.R: set owner/group (was: 501/0): Operation not permitted making init.d from ../../../../../../R-3.6-branch/src/library/graphics/src/init.c clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/graphics/src/init.c -o init.o making base.d from ../../../../../../R-3.6-branch/src/library/graphics/src/base.c making graphics.d from ../../../../../../R-3.6-branch/src/library/graphics/src/graphics.c making par.d from ../../../../../../R-3.6-branch/src/library/graphics/src/par.c making plot.d from ../../../../../../R-3.6-branch/src/library/graphics/src/plot.c making stem.d from ../../../../../../R-3.6-branch/src/library/graphics/src/stem.c making plot3d.d from ../../../../../../R-3.6-branch/src/library/graphics/src/plot3d.c clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/graphics/src/base.c -o base.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/graphics/src/graphics.c -o graphics.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/graphics/src/par.c -o par.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/graphics/src/plot.c -o plot.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/graphics/src/plot3d.c -o plot3d.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I../../../../../../R-3.6-branch/src/main -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/graphics/src/stem.c -o stem.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir ../../../../library/graphics/libs byte-compiling package 'graphics' building package 'stats' mkdir ../../../library/stats mkdir ../../../library/stats/R
mv: all.R: set owner/group (was: 501/0): Operation not permitted making init.d from ../../../../../../R-3.6-branch/src/library/stats/src/init.c making kmeans.d from ../../../../../../R-3.6-branch/src/library/stats/src/kmeans.c making bandwidths.d from ../../../../../../R-3.6-branch/src/library/stats/src/bandwidths.c making ansari.d from ../../../../../../R-3.6-branch/src/library/stats/src/ansari.c making chisqsim.d from ../../../../../../R-3.6-branch/src/library/stats/src/chisqsim.c making fexact.d from ../../../../../../R-3.6-branch/src/library/stats/src/fexact.c making d2x2xk.d from ../../../../../../R-3.6-branch/src/library/stats/src/d2x2xk.c making kendall.d from ../../../../../../R-3.6-branch/src/library/stats/src/kendall.c making ks.d from ../../../../../../R-3.6-branch/src/library/stats/src/ks.c making line.d from ../../../../../../R-3.6-branch/src/library/stats/src/line.c making smooth.d from ../../../../../../R-3.6-branch/src/library/stats/src/smooth.c making prho.d from ../../../../../../R-3.6-branch/src/library/stats/src/prho.c making swilk.d from ../../../../../../R-3.6-branch/src/library/stats/src/swilk.c making loessc.d from ../../../../../../R-3.6-branch/src/library/stats/src/loessc.c making ksmooth.d from ../../../../../../R-3.6-branch/src/library/stats/src/ksmooth.c making monoSpl.d from ../../../../../../R-3.6-branch/src/library/stats/src/monoSpl.c making isoreg.d from ../../../../../../R-3.6-branch/src/library/stats/src/isoreg.c making Srunmed.d from ../../../../../../R-3.6-branch/src/library/stats/src/Srunmed.c making dblcen.d from ../../../../../../R-3.6-branch/src/library/stats/src/dblcen.c making distance.d from ../../../../../../R-3.6-branch/src/library/stats/src/distance.c making hclust-utils.d from ../../../../../../R-3.6-branch/src/library/stats/src/hclust-utils.c making nls.d from ../../../../../../R-3.6-branch/src/library/stats/src/nls.c making rWishart.d from ../../../../../../R-3.6-branch/src/library/stats/src/rWishart.c making HoltWinters.d from ../../../../../../R-3.6-branch/src/library/stats/src/HoltWinters.c making PPsum.d from ../../../../../../R-3.6-branch/src/library/stats/src/PPsum.c making arima.d from ../../../../../../R-3.6-branch/src/library/stats/src/arima.c making burg.d from ../../../../../../R-3.6-branch/src/library/stats/src/burg.c making filter.d from ../../../../../../R-3.6-branch/src/library/stats/src/filter.c making mAR.d from ../../../../../../R-3.6-branch/src/library/stats/src/mAR.c making pacf.d from ../../../../../../R-3.6-branch/src/library/stats/src/pacf.c making starma.d from ../../../../../../R-3.6-branch/src/library/stats/src/starma.c making port.d from ../../../../../../R-3.6-branch/src/library/stats/src/port.c making family.d from ../../../../../../R-3.6-branch/src/library/stats/src/family.c making sbart.d from ../../../../../../R-3.6-branch/src/library/stats/src/sbart.c making approx.d from ../../../../../../R-3.6-branch/src/library/stats/src/approx.c making loglin.d from ../../../../../../R-3.6-branch/src/library/stats/src/loglin.c making lowess.d from ../../../../../../R-3.6-branch/src/library/stats/src/lowess.c making massdist.d from ../../../../../../R-3.6-branch/src/library/stats/src/massdist.c making splines.d from ../../../../../../R-3.6-branch/src/library/stats/src/splines.c making lm.d from ../../../../../../R-3.6-branch/src/library/stats/src/lm.c making complete_cases.d from ../../../../../../R-3.6-branch/src/library/stats/src/complete_cases.c making cov.d from ../../../../../../R-3.6-branch/src/library/stats/src/cov.c making deriv.d from ../../../../../../R-3.6-branch/src/library/stats/src/deriv.c making fft.d from ../../../../../../R-3.6-branch/src/library/stats/src/fft.c making fourier.d from ../../../../../../R-3.6-branch/src/library/stats/src/fourier.c making model.d from ../../../../../../R-3.6-branch/src/library/stats/src/model.c making optim.d from ../../../../../../R-3.6-branch/src/library/stats/src/optim.c making optimize.d from ../../../../../../R-3.6-branch/src/library/stats/src/optimize.c making integrate.d from ../../../../../../R-3.6-branch/src/library/stats/src/integrate.c making random.d from ../../../../../../R-3.6-branch/src/library/stats/src/random.c making distn.d from ../../../../../../R-3.6-branch/src/library/stats/src/distn.c making zeroin.d from ../../../../../../R-3.6-branch/src/library/stats/src/zeroin.c making rcont.d from ../../../../../../R-3.6-branch/src/library/stats/src/rcont.c making influence.d from ../../../../../../R-3.6-branch/src/library/stats/src/influence.c clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/init.c -o init.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/kmeans.c -o kmeans.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/ansari.c -o ansari.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/bandwidths.c -o bandwidths.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/chisqsim.c -o chisqsim.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/d2x2xk.c -o d2x2xk.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/fexact.c -o fexact.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/kendall.c -o kendall.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/ks.c -o ks.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/line.c -o line.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/smooth.c -o smooth.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/prho.c -o prho.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/swilk.c -o swilk.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/ksmooth.c -o ksmooth.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/loessc.c -o loessc.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/monoSpl.c -o monoSpl.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/isoreg.c -o isoreg.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/Srunmed.c -o Srunmed.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/dblcen.c -o dblcen.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/distance.c -o distance.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/hclust-utils.c -o hclust-utils.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/nls.c -o nls.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/rWishart.c -o rWishart.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/HoltWinters.c -o HoltWinters.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/PPsum.c -o PPsum.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/arima.c -o arima.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/burg.c -o burg.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/filter.c -o filter.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/mAR.c -o mAR.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/pacf.c -o pacf.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/starma.c -o starma.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/port.c -o port.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/family.c -o family.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/sbart.c -o sbart.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/approx.c -o approx.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/loglin.c -o loglin.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/lowess.c -o lowess.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/massdist.c -o massdist.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/splines.c -o splines.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/lm.c -o lm.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/complete_cases.c -o complete_cases.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/cov.c -o cov.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/deriv.c -o deriv.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/fft.c -o fft.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/fourier.c -o fourier.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/model.c -o model.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/optim.c -o optim.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/optimize.c -o optimize.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/integrate.c -o integrate.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/random.c -o random.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/distn.c -o distn.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/zeroin.c -o zeroin.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/rcont.c -o rcont.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fopenmp -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/influence.c -o influence.o gfortran -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/bsplvd.f -o bsplvd.o gfortran -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/bvalue.f -o bvalue.o gfortran -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/bvalus.f -o bvalus.o gfortran -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f -o loessf.o gfortran -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/ppr.f -o ppr.o gfortran -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/qsbart.f -o qsbart.o gfortran -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/sgram.f -o sgram.o
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:60:14: j=DBLE(j)/2.D0 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1894:14: m=DBLE(l+u)/2.D0 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1399:20: i=phi(pi(ii)) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:928:12: lg=DBLE(lg)/2.D0 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] gfortran -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/sinerp.f -o sinerp.o
../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:523:22: if(deg.eq.2) dk=dble((d+2)*(d+1))/2.d0 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1205:13: ifloor=x 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:835:22: if(deg.eq.2) dk=dble((d+2)*(d+1))/2.d0 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1583:18: i1=dble((d+2)*(d+1))/2.d0 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:473:25: subroutine ehg133(n,d,vc,nvmax,nc,ncmax,a,c,hi,lo,v,vval,xi,m,z,s) 1 Warning: Unused dummy argument 'n' at (1) [-Wunused-dummy-argument] ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:473:39: subroutine ehg133(n,d,vc,nvmax,nc,ncmax,a,c,hi,lo,v,vval,xi,m,z,s) 1 Warning: Unused dummy argument 'nc' at (1) [-Wunused-dummy-argument] ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:828:31: subroutine ehg197(deg,tau,d,f,dk,trl) 1 Warning: Unused dummy argument 'tau' at (1) [-Wunused-dummy-argument] ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1985:31: subroutine ehg137(z,kappa,leaf,nleaf,d,nv,nvmax,ncmax,a,xi,lo,hi) 1 Warning: Unused dummy argument 'kappa' at (1) [-Wunused-dummy-argument] ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1985:47: subroutine ehg137(z,kappa,leaf,nleaf,d,nv,nvmax,ncmax,a,xi,lo,hi) 1 Warning: Unused dummy argument 'nv' at (1) [-Wunused-dummy-argument] ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1985:53: subroutine ehg137(z,kappa,leaf,nleaf,d,nv,nvmax,ncmax,a,xi,lo,hi) 1 Warning: Unused dummy argument 'nvmax' at (1) [-Wunused-dummy-argument] ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1498:50: subroutine lowesb(xx,yy,ww,diagl,infl,iv,liv,lv,wv) 1 Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument] ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1498:53: subroutine lowesb(xx,yy,ww,diagl,infl,iv,liv,lv,wv) 1 Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument] ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1649:30: subroutine lowese(iv,liv,lv,wv,m,z,s) 1 Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument] ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1649:33: subroutine lowese(iv,liv,lv,wv,m,z,s) 1 Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument] ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1668:39: subroutine lowesf(xx,yy,ww,iv,liv,lv,wv,m,z,l,ihat,s) 1 Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument] ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1668:42: subroutine lowesf(xx,yy,ww,iv,liv,lv,wv,m,z,l,ihat,s) 1 Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument] ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1700:30: subroutine lowesl(iv,liv,lv,wv,m,z,l) 1 Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument] ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1700:33: subroutine lowesl(iv,liv,lv,wv,m,z,l) 1 Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument] ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1722:33: subroutine lowesr(yy,iv,liv,lv,wv) 1 Warning: Unused dummy argument 'liv' at (1) [-Wunused-dummy-argument] ../../../../../../R-3.6-branch/src/library/stats/src/loessf.f:1722:36: subroutine lowesr(yy,iv,liv,lv,wv) 1 Warning: Unused dummy argument 'lv' at (1) [-Wunused-dummy-argument] gfortran -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/sslvrg.f -o sslvrg.o gfortran -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/stxwx.f -o stxwx.o gfortran -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/hclust.f -o hclust.o gfortran -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/kmns.f -o kmns.o gfortran -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/eureka.f -o eureka.o gfortran -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/stl.f -o stl.o gfortran -fPIC -Wall -g -O2 -msse2 -mfpmath=sse -c ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f -o portsrc.o gfortran -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/stats/src/lminfl.f -o lminfl.o
../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:6658:0: NCOMP = NCOMP + 1 Warning: 'ncomp' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:6569:0: INTEGER DEG,HEAD,IC,IP,IPL,IPU,IR,JCOL,JP,JPL,JPU,L,MAXINC, Warning: 'jcol' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:5516:0: IF (ALPHAK .LE. ZERO .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK) Warning: 'alphak' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:5653:0: IF (ALPHAK .GE. TWOPSI*PSIFAC) GO TO 310 Warning: 'psifac' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:10407:0: V(PREDUC) = HALF * (DABS(ALPHAK)*DST*DST + GTSTA) Warning: 'gtsta' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:10324:0: IF (-V(DST0) .GE. ALPHAK .OR. ALPHAK .LT. LK .OR. ALPHAK .GE. UK) Warning: 'alphak' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:10319:0: LK = DMAX1(LK, PHI*W(PHIPIN)) Warning: 'phi' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:10461:0: IF (KA .GE. KAMIN) GO TO 340 Warning: 'kamin' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:12238:0: V(NREDUC) = NRED Warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:12241:0: V(DST0) = DNWTST Warning: 'dnwtst' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:2510:0: V(NREDUC) = NRED Warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:2509:0: 60 V(DST0) = DS0 Warning: 'ds0' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:8169:0: V(NREDUC) = NRED Warning: 'nred' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:8168:0: 90 V(DST0) = DS0 Warning: 'ds0' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:8647:0: 210 IV(FDH) = HES Warning: 'hes' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:3582:0: IF (LIV .LT. MIV2) GO TO 300 Warning: 'miv2' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:12074:0: 270 CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X) Warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:12031:0: CALL DL7VML(P, V(G1), V(RMAT1), V(QTR1)) Warning: 'rmat1' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:12031:0: Warning: 'qtr1' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:453:0: 300 CALL DITSUM(D, V(G1), IV, LIV, LV, P, V, X) Warning: 'g1' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:361:0: CALL DL7VML(P, V(G1), V(RMAT1), V(QTR1)) Warning: 'rmat1' may be used uninitialized in this function [-Wmaybe-uninitialized] ../../../../../../R-3.6-branch/src/library/stats/src/portsrc.f:361:0: Warning: 'qtr1' may be used uninitialized in this function [-Wmaybe-uninitialized] clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -L../../../../lib -lRlapack -L../../../../lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation
ld: warning: could not create compact unwind for _ehg136_: stack subq instruction is too different from dwarf stack size ld: warning: could not create compact unwind for _ehg139_: stack subq instruction is too different from dwarf stack size ld: warning: could not create compact unwind for _splineaa_: stack subq instruction is too different from dwarf stack size mkdir ../../../../library/stats/libs byte-compiling package 'stats' building package 'datasets' mkdir ../../../library/datasets mkdir ../../../library/datasets/data building package 'methods' mkdir ../../../library/methods mkdir ../../../library/methods/R
mv: all.R: set owner/group (was: 501/0): Operation not permitted making do_substitute_direct.d from ../../../../../../R-3.6-branch/src/library/methods/src/do_substitute_direct.c clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/methods/src/do_substitute_direct.c -o do_substitute_direct.o making init.d from ../../../../../../R-3.6-branch/src/library/methods/src/init.c making methods_list_dispatch.d from ../../../../../../R-3.6-branch/src/library/methods/src/methods_list_dispatch.c making slot.d from ../../../../../../R-3.6-branch/src/library/methods/src/slot.c making class_support.d from ../../../../../../R-3.6-branch/src/library/methods/src/class_support.c making tests.d from ../../../../../../R-3.6-branch/src/library/methods/src/tests.c making utils.d from ../../../../../../R-3.6-branch/src/library/methods/src/utils.c clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/methods/src/init.c -o init.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/methods/src/methods_list_dispatch.c -o methods_list_dispatch.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/methods/src/slot.c -o slot.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/methods/src/class_support.c -o class_support.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/methods/src/tests.c -o tests.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/methods/src/utils.c -o utils.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir ../../../../library/methods/libs byte-compiling 'methods' initializing class and method definitions ... done building package 'grid' mkdir ../../../library/grid mkdir ../../../library/grid/doc mkdir ../../../library/grid/R
mv: all.R: set owner/group (was: 501/0): Operation not permitted making gpar.d from ../../../../../../R-3.6-branch/src/library/grid/src/gpar.c making grid.d from ../../../../../../R-3.6-branch/src/library/grid/src/grid.c making just.d from ../../../../../../R-3.6-branch/src/library/grid/src/just.c making layout.d from ../../../../../../R-3.6-branch/src/library/grid/src/layout.c making register.d from ../../../../../../R-3.6-branch/src/library/grid/src/register.c making matrix.d from ../../../../../../R-3.6-branch/src/library/grid/src/matrix.c making state.d from ../../../../../../R-3.6-branch/src/library/grid/src/state.c making unit.d from ../../../../../../R-3.6-branch/src/library/grid/src/unit.c clang -I"../../../../include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/grid/src/gpar.c -o gpar.o clang -I"../../../../include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/grid/src/grid.c -o grid.o clang -I"../../../../include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/grid/src/just.c -o just.o clang -I"../../../../include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/grid/src/layout.c -o layout.o clang -I"../../../../include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/grid/src/matrix.c -o matrix.o making util.d from ../../../../../../R-3.6-branch/src/library/grid/src/util.c making viewport.d from ../../../../../../R-3.6-branch/src/library/grid/src/viewport.c clang -I"../../../../include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/grid/src/register.c -o register.o clang -I"../../../../include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/grid/src/state.c -o state.o clang -I"../../../../include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/grid/src/unit.c -o unit.o clang -I"../../../../include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/grid/src/util.c -o util.o clang -I"../../../../include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/grid/src/viewport.c -o viewport.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir ../../../../library/grid/libs byte-compiling package 'grid' building package 'splines' mkdir ../../../library/splines mkdir ../../../library/splines/R
mv: all.R: set owner/group (was: 501/0): Operation not permitted clang -I"../../../../include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/splines/src/splines.c -o splines.o making splines.d from ../../../../../../R-3.6-branch/src/library/splines/src/splines.c clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o splines.so splines.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir ../../../../library/splines/libs byte-compiling package 'splines' building package 'stats4' mkdir ../../../library/stats4 mkdir ../../../library/stats4/R
mv: all.R: set owner/group (was: 501/0): Operation not permitted byte-compiling package 'stats4' building package 'tcltk' mkdir ../../../library/tcltk mkdir ../../../library/tcltk/R
mv: all.R: set owner/group (was: 501/0): Operation not permitted mkdir ../../../library/tcltk/exec clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include -I/opt/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/tcltk/src/init.c -o init.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include -I/opt/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/tcltk/src/tcltk.c -o tcltk.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -I/usr/local/include -I/usr/local/include -I/opt/X11/include -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/tcltk/src/tcltk_unix.c -o tcltk_unix.o making init.d from ../../../../../../R-3.6-branch/src/library/tcltk/src/init.c making tcltk_unix.d from ../../../../../../R-3.6-branch/src/library/tcltk/src/tcltk_unix.c making tcltk.d from ../../../../../../R-3.6-branch/src/library/tcltk/src/tcltk.c clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/local/lib -ltcl8.6 -L/usr/local/lib -ltk8.6 -L/opt/X11/lib -lX11 -Wl,-weak-lXss -lXext -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir ../../../../library/tcltk/libs byte-compiling package 'tcltk' building package 'parallel' mkdir ../../../library/parallel mkdir ../../../library/parallel/doc mkdir ../../../library/parallel/R
mv: all.R: set owner/group (was: 501/0): Operation not permitted clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/parallel/src/init.c -o init.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/parallel/src/rngstream.c -o rngstream.o clang -I"../../../../include" -DNDEBUG -I../../../include -I../../../../../../R-3.6-branch/src/include -DHAVE_CONFIG_H -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../../../../../../R-3.6-branch/src/library/parallel/src/fork.c -o fork.o making init.d from ../../../../../../R-3.6-branch/src/library/parallel/src/init.c making rngstream.d from ../../../../../../R-3.6-branch/src/library/parallel/src/rngstream.c making fork.d from ../../../../../../R-3.6-branch/src/library/parallel/src/fork.c clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib -L/usr/local/lib -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR -Wl,-framework -Wl,CoreFoundation mkdir ../../../../library/parallel/libs byte-compiling package 'parallel' installing parsed NAMESPACE files make[1]: Nothing to be done for `R'. you should 'make docs' now ... configuring Java ... Java interpreter : /usr/bin/java Java version : 11.0.1 Java home path : /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home Java compiler : /usr/bin/javac Java headers gen.: /usr/bin/javah Java archive tool: /usr/bin/jar trying to compile and link a JNI program detected JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/darwin detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I/Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/include/darwin -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c conftest.c -o conftest.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o conftest.so conftest.o -L/Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/lib/server -ljvm -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation JAVA_HOME : /Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home Java library path: $(JAVA_HOME)/lib/server JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/darwin JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm Updating Java configuration in /Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch Done. creating doc/NEWS creating doc/NEWS.pdf creating doc/manual/R-FAQ.html creating doc/manual/version.texi mkdir ../../doc/manual/images creating doc/manual/R-data.html creating doc/manual/R-admin.html creating doc/manual/R-exts.html creating doc/manual/R-intro.html creating doc/manual/R-ints.html creating doc/manual/R-lang.html installing parsed Rd grid datasets grDevices tcltk splines graphics stats4 compiler methods tools parallel utils stats base building/updating package metadata ... writing package indices begin installing recommended package MASS begin installing recommended package lattice begin installing recommended package codetools begin installing recommended package KernSmooth begin installing recommended package rpart begin installing recommended package foreign begin installing recommended package nnet begin installing recommended package spatial * installing *source* package 'codetools' ... ** package 'codetools' successfully unpacked and MD5 sums checked ** using non-staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (codetools) * installing *source* package 'nnet' ... ** package 'nnet' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c nnet.c -o nnet.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o nnet.so nnet.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.6-branch/library/nnet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (nnet) * installing *source* package 'spatial' ... ** package 'spatial' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c krc.c -o krc.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c pps.c -o pps.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o spatial.so init.o krc.o pps.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.6-branch/library/spatial/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (spatial) * installing *source* package 'KernSmooth' ... ** package 'KernSmooth' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs gfortran -fPIC -Wall -g -O2 -c blkest.f -o blkest.o gfortran -fPIC -Wall -g -O2 -c cp.f -o cp.o gfortran -fPIC -Wall -g -O2 -c dgedi.f -o dgedi.o gfortran -fPIC -Wall -g -O2 -c dgefa.f -o dgefa.o gfortran -fPIC -Wall -g -O2 -c dgesl.f -o dgesl.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o gfortran -fPIC -Wall -g -O2 -c linbin.f -o linbin.o gfortran -fPIC -Wall -g -O2 -c linbin2D.f -o linbin2D.o gfortran -fPIC -Wall -g -O2 -c locpoly.f -o locpoly.o gfortran -fPIC -Wall -g -O2 -c rlbin.f -o rlbin.o gfortran -fPIC -Wall -g -O2 -c sdiag.f -o sdiag.o gfortran -fPIC -Wall -g -O2 -c sstdiag.f -o sstdiag.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.6-branch/library/KernSmooth/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (KernSmooth) * installing *source* package 'foreign' ... ** package 'foreign' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c R_systat.c -o R_systat.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c Rdbfread.c -o Rdbfread.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c Rdbfwrite.c -o Rdbfwrite.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c SASxport.c -o SASxport.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c avl.c -o avl.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c dbfopen.c -o dbfopen.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c file-handle.c -o file-handle.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c format.c -o format.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c minitab.c -o minitab.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c pfm-read.c -o pfm-read.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c sfm-read.c -o sfm-read.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c spss.c -o spss.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c stataread.c -o stataread.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.6-branch/library/foreign/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (foreign) * installing *source* package 'rpart' ... ** package 'rpart' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c anova.c -o anova.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c anovapred.c -o anovapred.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c branch.c -o branch.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c bsplit.c -o bsplit.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c choose_surg.c -o choose_surg.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c fix_cp.c -o fix_cp.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c free_tree.c -o free_tree.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c gini.c -o gini.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c graycode.c -o graycode.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c insert_split.c -o insert_split.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c make_cp_list.c -o make_cp_list.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c make_cp_table.c -o make_cp_table.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c mysort.c -o mysort.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c nodesplit.c -o nodesplit.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c partition.c -o partition.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c poisson.c -o poisson.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c pred_rpart.c -o pred_rpart.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c print_tree.c -o print_tree.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c rpart.c -o rpart.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c rpart_callback.c -o rpart_callback.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c rpartexp.c -o rpartexp.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c rpartexp2.c -o rpartexp2.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c rpcountup.c -o rpcountup.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c rpmatrix.c -o rpmatrix.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c rundown.c -o rundown.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c rundown2.c -o rundown2.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c surrogate.c -o surrogate.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c usersplit.c -o usersplit.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c xpred.c -o xpred.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c xval.c -o xval.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.6-branch/library/rpart/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (rpart) * installing *source* package 'MASS' ... ** package 'MASS' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c MASS.c -o MASS.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c lqs.c -o lqs.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o MASS.so MASS.o lqs.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.6-branch/library/MASS/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (MASS) begin installing recommended package class begin installing recommended package cluster * installing *source* package 'lattice' ... ** package 'lattice' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c threeDplot.c -o threeDplot.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o lattice.so init.o threeDplot.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.6-branch/library/lattice/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (lattice) begin installing recommended package nlme begin installing recommended package Matrix * installing *source* package 'class' ... ** package 'class' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c class.c -o class.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o class.so class.o -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.6-branch/library/class/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (class) * installing *source* package 'cluster' ... ** package 'cluster' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c clara.c -o clara.o gfortran -fPIC -Wall -g -O2 -c daisy.f -o daisy.o gfortran -fPIC -Wall -g -O2 -c dysta.f -o dysta.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c fanny.c -o fanny.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c mona.c -o mona.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c pam.c -o pam.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c sildist.c -o sildist.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c spannel.c -o spannel.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c twins.c -o twins.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.6-branch/library/cluster/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (cluster) * installing *source* package 'nlme' ... ** package 'nlme' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs gfortran -fPIC -Wall -g -O2 -c chol.f -o chol.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c corStruct.c -o corStruct.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c gnls.c -o gnls.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c matrix.c -o matrix.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c nlOptimizer.c -o nlOptimizer.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c nlme.c -o nlme.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c nlmefit.c -o nlmefit.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c pdMat.c -o pdMat.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c pythag.c -o pythag.o gfortran -fPIC -Wall -g -O2 -c rs.f -o rs.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o pythag.o rs.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.6-branch/library/nlme/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (nlme) * installing *source* package 'Matrix' ... ** package 'Matrix' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c CHMfactor.c -o CHMfactor.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c Csparse.c -o Csparse.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c TMatrix_as.c -o TMatrix_as.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c Tsparse.c -o Tsparse.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c Mutils.c -o Mutils.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c chm_common.c -o chm_common.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c cs.c -o cs.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c cs_utils.c -o cs_utils.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c dense.c -o dense.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c dgCMatrix.c -o dgCMatrix.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c dgTMatrix.c -o dgTMatrix.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c dgeMatrix.c -o dgeMatrix.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c dpoMatrix.c -o dpoMatrix.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c dppMatrix.c -o dppMatrix.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c dsCMatrix.c -o dsCMatrix.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c dsyMatrix.c -o dsyMatrix.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c dspMatrix.c -o dspMatrix.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c dtCMatrix.c -o dtCMatrix.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c dtTMatrix.c -o dtTMatrix.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c dtrMatrix.c -o dtrMatrix.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c dtpMatrix.c -o dtpMatrix.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c factorizations.c -o factorizations.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ldense.c -o ldense.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c lgCMatrix.c -o lgCMatrix.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c sparseQR.c -o sparseQR.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c abIndex.c -o abIndex.o ( cd Lib ; /Applications/Xcode.app/Contents/Developer/usr/bin/make clean ) ( cd Source ; /Applications/Xcode.app/Contents/Developer/usr/bin/make clean ) ( cd Source ; /Applications/Xcode.app/Contents/Developer/usr/bin/make clean ) ( cd Lib ; /Applications/Xcode.app/Contents/Developer/usr/bin/make -f "/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/etc/Makeconf" -f Makefile ) clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Core/cholmod_aat.c -o cholmod_aat.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Core/cholmod_add.c -o cholmod_add.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Core/cholmod_band.c -o cholmod_band.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Core/cholmod_common.c -o cholmod_common.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Core/cholmod_complex.c -o cholmod_complex.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Core/cholmod_copy.c -o cholmod_copy.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Core/cholmod_dense.c -o cholmod_dense.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Core/cholmod_error.c -o cholmod_error.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Core/cholmod_factor.c -o cholmod_factor.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Core/cholmod_memory.c -o cholmod_memory.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Core/cholmod_sparse.c -o cholmod_sparse.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Core/cholmod_transpose.c -o cholmod_transpose.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Core/cholmod_triplet.c -o cholmod_triplet.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Core/cholmod_version.c -o cholmod_version.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Check/cholmod_check.c -o cholmod_check.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Check/cholmod_read.c -o cholmod_read.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Check/cholmod_write.c -o cholmod_write.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Modify/cholmod_updown.c -o cholmod_updown.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Core/cholmod_aat.c -o cholmod_l_aat.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Core/cholmod_add.c -o cholmod_l_add.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Core/cholmod_band.c -o cholmod_l_band.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Core/cholmod_common.c -o cholmod_l_common.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Core/cholmod_complex.c -o cholmod_l_complex.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Core/cholmod_copy.c -o cholmod_l_copy.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Core/cholmod_dense.c -o cholmod_l_dense.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Core/cholmod_error.c -o cholmod_l_error.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Core/cholmod_factor.c -o cholmod_l_factor.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Core/cholmod_memory.c -o cholmod_l_memory.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Core/cholmod_sparse.c -o cholmod_l_sparse.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Core/cholmod_transpose.c -o cholmod_l_transpose.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Core/cholmod_triplet.c -o cholmod_l_triplet.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Core/cholmod_version.c -o cholmod_l_version.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Check/cholmod_check.c -o cholmod_l_check.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Check/cholmod_read.c -o cholmod_l_read.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Check/cholmod_write.c -o cholmod_l_write.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Modify/cholmod_updown.c -o cholmod_l_updown.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -DDLONG -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o ( cd Source ; /Applications/Xcode.app/Contents/Developer/usr/bin/make -f "/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/etc/Makeconf" -f Makefile lib ) clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c colamd_global.c -o colamd_global.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c colamd.c -o colamd.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDLONG -c colamd.c -o colamd_l.o ar -rucs ../../COLAMD.a colamd_global.o colamd.o colamd_l.o ( cd Source ; /Applications/Xcode.app/Contents/Developer/usr/bin/make -f "/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/etc/Makeconf" -f Makefile lib ) clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDINT -c amd_1.c -o amd_i_1.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDLONG -c amd_1.c -o amd_l_1.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDINT -c amd_2.c -o amd_i_2.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDLONG -c amd_2.c -o amd_l_2.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDINT -c amd_order.c -o amd_i_order.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDLONG -c amd_order.c -o amd_l_order.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDINT -c amd_control.c -o amd_i_control.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDLONG -c amd_control.c -o amd_l_control.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDINT -c amd_info.c -o amd_i_info.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDLONG -c amd_info.c -o amd_l_info.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDINT -c amd_global.c -o amd_i_global.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -I../Include -DDLONG -c amd_global.c -o amd_l_global.o ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o amd_i_global.o amd_l_global.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: ../../AMD.a(amd_i_dump.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: ../../AMD.a(amd_l_dump.o) has no symbols clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -DNTIMER -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c SuiteSparse_config.c -o SuiteSparse_config.o ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -L/usr/local/lib -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lRlapack -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/lib -lR -Wl,-framework -Wl,CoreFoundation installing to /Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/R-build/el-capitan-x86_64/R-3.6-branch/library/Matrix/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'chol2inv' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix' Creating a generic function for 'diag' from package 'base' in package 'Matrix' Creating a generic function for 'drop' from package 'base' in package 'Matrix' Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix' Creating a generic function for 'unname' from package 'base' in package 'Matrix' Creating a generic function for 'norm' from package 'base' in package 'Matrix' Creating a generic function for 'rcond' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'rcond' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"CsparseMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc" Creating a generic function for 'colSums' from package 'base' in package 'Matrix' Creating a generic function for 'colMeans' from package 'base' in package 'Matrix' Creating a generic function for 'rowSums' from package 'base' in package 'Matrix' Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix' in method for 'colSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'colMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix' Creating a generic function for 'diag<-' from package 'base' in package 'Matrix' Creating a generic function for 'crossprod' from package 'base' in package 'Matrix' Creating a generic function for 'tcrossprod' from package 'base' in package 'Matrix' Creating a generic function for 'which' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"graphAM","sparseMatrix"': no definition for class "graphAM" in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph" in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph" in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL" in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL" Creating a generic function for 'qr.R' from package 'base' in package 'Matrix' Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix' Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix' Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix' Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix' Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Matrix) begin installing recommended package mgcv begin installing recommended package survival * installing *source* package 'survival' ... ** package 'survival' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c agexact.c -o agexact.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c agfit4.c -o agfit4.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c agfit5.c -o agfit5.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c agmart.c -o agmart.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c agmart3.c -o agmart3.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c agscore2.c -o agscore2.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c agsurv3.c -o agsurv3.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c agsurv4.c -o agsurv4.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c agsurv5.c -o agsurv5.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c chinv2.c -o chinv2.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c chinv3.c -o chinv3.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c cholesky2.c -o cholesky2.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c cholesky3.c -o cholesky3.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c cholesky5.c -o cholesky5.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c chsolve2.c -o chsolve2.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c chsolve3.c -o chsolve3.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c chsolve5.c -o chsolve5.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c concordance1.c -o concordance1.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c concordance3.c -o concordance3.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c cox_Rcallback.c -o cox_Rcallback.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c coxcount1.c -o coxcount1.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c coxdetail.c -o coxdetail.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c coxexact.c -o coxexact.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c coxfit5.c -o coxfit5.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c coxfit6.c -o coxfit6.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c coxmart.c -o coxmart.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c coxmart2.c -o coxmart2.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c coxph_wtest.c -o coxph_wtest.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c coxsafe.c -o coxsafe.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c coxscho.c -o coxscho.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c coxscore2.c -o coxscore2.o clang -I"/Builds/R-builds/nightly/el-capitan-x86_64/R-3.6-branch/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c coxsurv1.c -o coxsurv1.o coxsurv1.c:150:13: warning: variables 'i' and 'nvar' used in loop condition not modified in loop body [-Wfor-loop-analysis] for (k=0; i
processing 'displaylist.Rnw' processing 'frame.Rnw' processing 'grid.Rnw' processing 'grobs.Rnw' processing 'interactive.Rnw' processing 'locndimn.Rnw' processing 'moveline.Rnw' processing 'nonfinite.Rnw' processing 'plotexample.Rnw' processing 'rotated.Rnw' processing 'saveload.Rnw' processing 'sharing.Rnw' processing 'viewports.Rnw' building/updating vignettes for package 'parallel' ...
processing 'parallel.Rnw' building/updating vignettes for package 'utils' ...
processing 'Sweave.Rnw' [[system return code 0x0]]