fb7a4d0df7aa157e4d50e93bfbf7ead2 *DESCRIPTION
59eb89a1780bb5600aa6102230ce2d7c *LICENSE
23fd5cc522fead0a6bf4019a100097f5 *NAMESPACE
36f7b74b0fc56b2022fffe755cd71c68 *NEWS
36f7b74b0fc56b2022fffe755cd71c68 *NEWS.md
d34b0e319e3be5a979b7092ffb6bf550 *R/BioMonTools.R
354303225d156bbc123f86a24a2537ab *R/MapTaxaObs.R
d591e8838477328dbbad7bce231fba09 *R/assign_indexclass.R
71449faee83c1b507605a0346da65112 *R/data.R
2a2ac0a8d952f20fec0e0308283e61eb *R/markExcluded.R
a41ffd4ad538892cc7a243488b7d21fe *R/metric_scores.R
7366e614144fab4b00f98bdc0a3dcda6 *R/metric_stats.R
1c2e55d5f645d10e9ac5877ce6284052 *R/metric_stats2.R
bdb577720359138f6125ecc44f25e7e2 *R/metric_values.R
b024350a4f2e323fa2c54dd0af642c46 *R/metric_values_excel.R
45d40462f02b7d0a1066e991ea728e37 *R/qc_checks.R
fdcb4974084b6a54cdc973c38b8c6e94 *R/qc_taxa.R
aa71c7d1a00a7f5588430512b7f6ed57 *R/qc_taxa_match_official.R
85fd253f6ee7c1073dd56382af4c9846 *R/qc_taxa_names_proof.R
af552dbd012b7ec53897821ed10e7ff4 *R/qc_taxa_phylo.R
3b3f55578ef2a7c031c4a1030545dd14 *R/qc_taxa_values_character.R
20bcd165e9318a0f8f473ba6e67fc1bf *R/qc_taxa_values_logical.R
7f1feabb4e05996ce25e492af881e14c *R/qc_taxa_values_numeric.R
2329eebe5ce5da268e4bf967f75883ef *R/rarify.R
947c2d7f61bd4a601c8f8fbe64afceb9 *R/taxa_translate.R
c0af333ef1c2422885bf00ca905a32b2 *README.md
b8bb8303379dc1c2eda11f2e70c80c51 *build/vignette.rds
e08bd020737e849bc5ee8a3c93986067 *data/TaxaMaster_Ben_BCG_PacNW.rda
93683f53b460cfbfa444d7a3c439f70a *data/data_Taxa_MA.rda
532a800cf3f3e8f28a2d6d8cb054ba8b *data/data_algae_names_official.rda
6b38becd41834d7de9823539bebf9a1f *data/data_algae_names_user.rda
8640bc1b6648ebb16cab38ddfc1891fe *data/data_benthos_MBSS.rda
9c471fcd88f0862790893a6fc5fddaf1 *data/data_benthos_PacNW.rda
fd9fdbfb676079861e066e6c77abd269 *data/data_bio2rarify.rda
3d63c5bad879749349312e3f018df672 *data/data_coral_bcg_metric_dev.rda
7ba98e892c2ae2f3bbac0d1e6583cb73 *data/data_coral_bcg_metric_qc.rda
a34d6e269c5d1fe0cff31840e0c2d27f *data/data_diatom_mmi_dev.rda
f68789dd706005f1b2664046a33e7dd5 *data/data_diatom_mmi_qc.rda
431f3b872b0ef4dc61ab91a6eef9b51e *data/data_fish_MBSS.rda
14f090061e072d1b0176d7eb289f4733 *data/data_metval_scmb_ibi.rda
d360dc78d552eeff672d1cda82101d14 *data/data_mmi_dev.rda
fe02fd50d0a218c1e7d55f9bb28ae670 *data/data_mmi_dev_small.rda
0a2922828a90e33b019df6761ab8d0f0 *data/data_taxa_names_issues.rda
47e8b21c7144a01b1ec38209a0651520 *inst/doc/vignette_BioMonTools.R
bfedd7a237fb304599d74c1d41c244a3 *inst/doc/vignette_BioMonTools.Rmd
eb6641ed1dff6ee841a9434d1a3e9633 *inst/doc/vignette_BioMonTools.html
f1ea49e51a99f0a638dd4a9620728e51 *inst/doc/vignette_MapTaxaObs.R
d89a26bd5a2d7881a36a5e585fbbdd7a *inst/doc/vignette_MapTaxaObs.Rmd
85dd05f541b8c1d4faf8255164ba951d *inst/doc/vignette_MapTaxaObs.html
1313b00d36215c4ca8dfed508d833a91 *inst/doc/vignette_NewIndex.R
abd473117a84b34e3d7d770fd4d0c33a *inst/doc/vignette_NewIndex.Rmd
e912ff83dd28b81853ae93fdc4ca0c0e *inst/doc/vignette_NewIndex.html
784e0d9d7bdf788fbfbfb3dbf55f8caa *inst/extdata/Data_Benthos.xlsx
c475c780c3694e4eb30d5821d782ea78 *inst/extdata/IndexClass.xlsx
ac7e51b6cb3f33f9afdf27169824acf9 *inst/extdata/MetricFlags.xlsx
ccfe3d49792cc160bfb1619bcf02ce21 *inst/extdata/MetricNames.xlsx
514f27172974ec30734e3f5d52e169a0 *inst/extdata/MetricScoring.xlsx
b27230721514b56ee60d21d20d1f6874 *inst/extdata/_Input_HiGradHiElev_noExclude_20220108_small.csv
5888efd119ddf87775428f9624a112c4 *inst/extdata/taxa_official/CHAR_Bugs.csv
617f495b09a35c509ef79e58e9204973 *inst/extdata/taxa_official/CHAR_Bugs_metadata.csv
4b3fb2d015943bb7d81e729862ed7b27 *inst/extdata/taxa_official/CHAR_Fish.csv
b7c8ca2a1052c758e7f7e40f205c3a74 *inst/extdata/taxa_official/CHAR_Fish_metadata.csv
18114eedec4deb6daed79606aa4e04f2 *inst/extdata/taxa_official/ORWA_ATTRIBUTES_20221212.csv
cf0a3228faaaaccac59aeb55e74d371d *inst/extdata/taxa_official/ORWA_ATTRIBUTES_METADATA_20221117.csv
87f78e5e90209e279659f715c63e5248 *inst/extdata/taxa_official/ORWA_TAXATRANSLATOR_20221219.csv
7166a49a6c34f97692d5f92617e3252c *inst/extdata/taxa_official/ORWA_TAXATRANSLATOR_20221219b.csv
cae6401599fe238dcbab5f18625930c6 *inst/extdata/taxa_official/_pick_files.csv
a1ca79700126a458e6ef88b8aec7d13d *man/BioMonTools-package.Rd
df4fe13164420c4b3bc02f0fa1218cad *man/MapTaxaObs.Rd
4007f55aa5b11cfc485cabd7a39ef1fa *man/TaxaMaster_Ben_BCG_PacNW.Rd
f3e3e05a8be96337d85461a09b3f9c0f *man/assign_IndexClass.Rd
da2289804a746097c44c59400d2e7a19 *man/data_Taxa_MA.Rd
1484b32c6a622fe34e2b571a1846ef6c *man/data_algae_names_official.Rd
230ab743d82aa89ff999a338755df807 *man/data_algae_names_user.Rd
5a1ae71ccaf697f0309d7b755dc91613 *man/data_benthos_MBSS.Rd
385557d9237f3209c8311daa6b9d9fe3 *man/data_benthos_PacNW.Rd
8698f3be86d98ca740d937888622d9e2 *man/data_bio2rarify.Rd
4dca9bb400dd0e090beee92ae6693fce *man/data_coral_bcg_metric_dev.Rd
f3a0678ddc386c2e855f28d0c0b0c7dd *man/data_coral_bcg_metric_qc.Rd
b26b6c3d5e9bd23cd62c68fb49e5d3b4 *man/data_diatom_mmi_dev.Rd
bfdcc00584b51bf3fcc19fe1c9603d8e *man/data_diatom_mmi_qc.Rd
b7a65201b15f64236a7afd7ccc7041ec *man/data_fish_MBSS.Rd
e267a5a0529c9ecc91f769c3acf38155 *man/data_metval_scmb_ibi.Rd
ad4916cc5e33094967c1f6be6300e216 *man/data_mmi_dev.Rd
74eb2ad4314a3a2ff2f9283f8636686b *man/data_mmi_dev_small.Rd
9cb6d2cb74e9da23e7ae3e4d592fa23b *man/data_taxa_names_issues.Rd
ac1c57ee6f706c953937e0e2a9ce28e3 *man/figures/logo.png
3af37ae70bfb3749e491908c31ee36e6 *man/markExcluded.Rd
f4650b87df5ff5fc30ec1bb4eeabaf80 *man/metric.scores.Rd
864cd327b52996bde6100d91445b92d9 *man/metric.stats.Rd
6fef43d696d271d9f00a855290c77183 *man/metric.stats2.Rd
f840ea856dff11eac5177aadc9ca6335 *man/metric.values.Rd
b8b5e5c339c8f45db4d0c363ec886df6 *man/metric.values.algae.Rd
39e3c12a139a947c74d53120104ea3ad *man/metric.values.bugs.Rd
b3c548cb029f308c203e74346aa10a14 *man/metric.values.coral.Rd
47fbcfae15c20e06e0b7443e17fdcfdc *man/metric.values.fish.Rd
4dea22455703a4bf347d740bf78fa4b2 *man/metvalgrpxl.Rd
09a92b0c4fa438ffd9c1760e56686054 *man/qc.checks.Rd
040a86ae6e8cd13ed927f589458eea27 *man/qc_taxa.Rd
81fcc599b7dcef07bbe23b5d56616327 *man/qc_taxa_match_official.Rd
b577a97e9ae58eca4cf39b44869bfd0f *man/qc_taxa_names_proof.Rd
72bd197a7c1946550271e36ff7465a95 *man/qc_taxa_phylo.Rd
19be648a927538d2554007c6d15a14ec *man/qc_taxa_values_character.Rd
71f650c778aba7efcd5b9edc62ae84cf *man/qc_taxa_values_logical.Rd
b7de5dccfff05a05dc591855288ed670 *man/qc_taxa_values_numeric.Rd
9a1eb30976bb8b3779f2efa4bd5e3575 *man/rarify.Rd
10723950c37fdfd24b9940484459c2e0 *man/taxa_translate.Rd
05c896e0b9f5fbfb7923965e45a4e50a *tests/testthat.R
855dafc387431edbbb8f48ad0dc92753 *tests/testthat/test_IndexClass.R
feb03a87935a8740b6dcf2a8eb8cf267 *tests/testthat/test_MapTaxaObs.R
b853effccb79edcbe5c17b0b39052736 *tests/testthat/test_assign_indexclass.R
7c37428e2d042cfb1eaba73b7340b84d *tests/testthat/test_markExcluded.R
17fbd06d2d77d007096de0d8b41707ed *tests/testthat/test_metric_calc.R
75418e6ff5f25c36224e00c5a536549d *tests/testthat/test_metric_names.R
6c48549406ad43b2b60973528780a0a7 *tests/testthat/test_metric_stats.R
f0db7a6ba3bdcbe3a02a851cbdab9576 *tests/testthat/test_metric_values.R
19f27c2cd64467d9a6a89ff3878f635d *tests/testthat/test_qc_checks.R
646cccdbaf83edef2b2f1b945b936976 *tests/testthat/test_qc_taxa_values_foo.R
61a2a6efd9d83ceef4c87491b52a475c *tests/testthat/test_rarify.R
91bfe22d9295012c7a1053f1bef427d7 *tests/testthat/test_taxa_translate.R
9a0b91404e673066fc1d5c40d0b57ab7 *tests/testthat/test_thresholds_numdigits.R
89bd0ff3ddfae122d79d5b91541fb50a *vignettes/ExcludeTaxaDecisionCrit.pdf
bfedd7a237fb304599d74c1d41c244a3 *vignettes/vignette_BioMonTools.Rmd
d89a26bd5a2d7881a36a5e585fbbdd7a *vignettes/vignette_MapTaxaObs.Rmd
abd473117a84b34e3d7d770fd4d0c33a *vignettes/vignette_NewIndex.Rmd
